Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A10 (solute carrier family 26 member 10)

Identity

Alias_namessolute carrier family 26, member 10
Other alias-
HGNC (Hugo) SLC26A10
LocusID (NCBI) 65012
Atlas_Id 73373
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 57619910 and ends at 57626151 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A10   14470
Cards
Entrez_Gene (NCBI)SLC26A10  65012  solute carrier family 26 member 10
Aliases
GeneCards (Weizmann)SLC26A10
Ensembl hg19 (Hinxton)ENSG00000135502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135502 [Gene_View]  chr12:57619910-57626151 [Contig_View]  SLC26A10 [Vega]
ICGC DataPortalENSG00000135502
TCGA cBioPortalSLC26A10
AceView (NCBI)SLC26A10
Genatlas (Paris)SLC26A10
WikiGenes65012
SOURCE (Princeton)SLC26A10
Genetics Home Reference (NIH)SLC26A10
Genomic and cartography
GoldenPath hg38 (UCSC)SLC26A10  -     chr12:57619910-57626151 +  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC26A10  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblSLC26A10 - 12q13.3 [CytoView hg19]  SLC26A10 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBISLC26A10 [Mapview hg19]  SLC26A10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF331523 AK122981 AK314085 AL050358 BC068027
RefSeq transcript (Entrez)NM_001018084 NM_133489
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC26A10
Cluster EST : UnigeneHs.727726 [ NCBI ]
CGAP (NCI)Hs.727726
Alternative Splicing GalleryENSG00000135502
Gene ExpressionSLC26A10 [ NCBI-GEO ]   SLC26A10 [ EBI - ARRAY_EXPRESS ]   SLC26A10 [ SEEK ]   SLC26A10 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65012
GTEX Portal (Tissue expression)SLC26A10
Human Protein AtlasENSG00000135502-SLC26A10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG04
Splice isoforms : SwissVarQ8NG04
PhosPhoSitePlusQ8NG04
Domaine pattern : Prosite (Expaxy)STAS (PS50801)   
Domains : Interpro (EBI)SLC26A/SulP_dom    SLC26A/SulP_fam    SLC26A10    STAS_dom   
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
Conserved Domain (NCBI)SLC26A10
DMDM Disease mutations65012
Blocks (Seattle)SLC26A10
SuperfamilyQ8NG04
Human Protein Atlas [tissue]ENSG00000135502-SLC26A10 [tissue]
Peptide AtlasQ8NG04
HPRD10234
IPIIPI00168873   IPI00884970   IPI00983106   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG04
IntAct (EBI)Q8NG04
FunCoupENSG00000135502
BioGRIDSLC26A10
STRING (EMBL)SLC26A10
ZODIACSLC26A10
Ontologies - Pathways
QuickGOQ8NG04
Ontology : AmiGOchloride channel activity  integral component of plasma membrane  secondary active sulfate transmembrane transporter activity  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  regulation of intracellular pH  sulfate transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIchloride channel activity  integral component of plasma membrane  secondary active sulfate transmembrane transporter activity  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  regulation of intracellular pH  sulfate transmembrane transport  chloride transmembrane transport  
NDEx NetworkSLC26A10
Atlas of Cancer Signalling NetworkSLC26A10
Wikipedia pathwaysSLC26A10
Orthology - Evolution
OrthoDB65012
GeneTree (enSembl)ENSG00000135502
Phylogenetic Trees/Animal Genes : TreeFamSLC26A10
HOVERGENQ8NG04
HOGENOMQ8NG04
Homologs : HomoloGeneSLC26A10
Homology/Alignments : Family Browser (UCSC)SLC26A10
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC26A10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC26A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A10
dbVarSLC26A10
ClinVarSLC26A10
1000_GenomesSLC26A10 
Exome Variant ServerSLC26A10
ExAC (Exome Aggregation Consortium)ENSG00000135502
GNOMAD BrowserENSG00000135502
Genetic variants : HAPMAP65012
Genomic Variants (DGV)SLC26A10 [DGVbeta]
DECIPHERSLC26A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC26A10 
Mutations
ICGC Data PortalSLC26A10 
TCGA Data PortalSLC26A10 
Broad Tumor PortalSLC26A10
OASIS PortalSLC26A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC26A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC26A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC26A10
DgiDB (Drug Gene Interaction Database)SLC26A10
DoCM (Curated mutations)SLC26A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC26A10 (select a term)
intoGenSLC26A10
Cancer3DSLC26A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC26A10
Genetic Testing Registry SLC26A10
NextProtQ8NG04 [Medical]
TSGene65012
GENETestsSLC26A10
Target ValidationSLC26A10
Huge Navigator SLC26A10 [HugePedia]
snp3D : Map Gene to Disease65012
BioCentury BCIQSLC26A10
ClinGenSLC26A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65012
Chemical/Pharm GKB GenePA37887
Clinical trialSLC26A10
Miscellaneous
canSAR (ICR)SLC26A10 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A10
EVEXSLC26A10
GoPubMedSLC26A10
iHOPSLC26A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:29 CET 2017

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