Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A11 (solute carrier family 26 member 11)

Identity

Alias_namessolute carrier family 26, member 11
solute carrier family 26 (anion exchanger), member 11
Other alias-
HGNC (Hugo) SLC26A11
LocusID (NCBI) 284129
Atlas_Id 54632
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 80220401 and ends at 80253509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CMIP (16q23.2) / SLC26A11 (17q25.3)ENDOV (17q25.3) / SLC26A11 (17q25.3)OAF (11q23.3) / SLC26A11 (17q25.3)
RNF213 (17q25.3) / SLC26A11 (17q25.3)SLC26A11 (17q25.3) / OAF (11q23.3)ENDOV 17q25.3 / SLC26A11 17q25.3
OAF 11q23.3 / SLC26A11 17q25.3RNF213 17q25.3 / SLC26A11 17q25.3SLC26A11 17q25.3 / OAF 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A11   14471
Cards
Entrez_Gene (NCBI)SLC26A11  284129  solute carrier family 26 member 11
Aliases
GeneCards (Weizmann)SLC26A11
Ensembl hg19 (Hinxton)ENSG00000181045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181045 [Gene_View]  chr17:80220401-80253509 [Contig_View]  SLC26A11 [Vega]
ICGC DataPortalENSG00000181045
TCGA cBioPortalSLC26A11
AceView (NCBI)SLC26A11
Genatlas (Paris)SLC26A11
WikiGenes284129
SOURCE (Princeton)SLC26A11
Genetics Home Reference (NIH)SLC26A11
Genomic and cartography
GoldenPath hg38 (UCSC)SLC26A11  -     chr17:80220401-80253509 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC26A11  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblSLC26A11 - 17q25.3 [CytoView hg19]  SLC26A11 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBISLC26A11 [Mapview hg19]  SLC26A11 [Mapview hg38]
OMIM610117   
Gene and transcription
Genbank (Entrez)AF331524 AF345195 AI963799 AJ544073 AK027293
RefSeq transcript (Entrez)NM_001166347 NM_001166348 NM_001166349 NM_173626
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC26A11
Cluster EST : UnigeneHs.4866 [ NCBI ]
CGAP (NCI)Hs.4866
Alternative Splicing GalleryENSG00000181045
Gene ExpressionSLC26A11 [ NCBI-GEO ]   SLC26A11 [ EBI - ARRAY_EXPRESS ]   SLC26A11 [ SEEK ]   SLC26A11 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284129
GTEX Portal (Tissue expression)SLC26A11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WA9
Splice isoforms : SwissVarQ86WA9
PhosPhoSitePlusQ86WA9
Domaine pattern : Prosite (Expaxy)SLC26A (PS01130)    STAS (PS50801)   
Domains : Interpro (EBI)S04_transporter_CS    SLC26A/SulP_dom    SLC26A/SulP_fam    STAS_dom   
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
Conserved Domain (NCBI)SLC26A11
DMDM Disease mutations284129
Blocks (Seattle)SLC26A11
SuperfamilyQ86WA9
Human Protein AtlasENSG00000181045
Peptide AtlasQ86WA9
HPRD11569
IPIIPI00410334   
Protein Interaction databases
DIP (DOE-UCLA)Q86WA9
IntAct (EBI)Q86WA9
FunCoupENSG00000181045
BioGRIDSLC26A11
STRING (EMBL)SLC26A11
ZODIACSLC26A11
Ontologies - Pathways
QuickGOQ86WA9
Ontology : AmiGOchloride channel activity  nucleoplasm  lysosome  lysosomal membrane  endoplasmic reticulum  Golgi apparatus  plasma membrane  plasma membrane  integral component of plasma membrane  ion transport  secondary active sulfate transmembrane transporter activity  sulfate transport  anion transmembrane transporter activity  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  integral component of membrane  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  intracellular membrane-bounded organelle  regulation of intracellular pH  extracellular exosome  sulfate transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIchloride channel activity  nucleoplasm  lysosome  lysosomal membrane  endoplasmic reticulum  Golgi apparatus  plasma membrane  plasma membrane  integral component of plasma membrane  ion transport  secondary active sulfate transmembrane transporter activity  sulfate transport  anion transmembrane transporter activity  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  integral component of membrane  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  intracellular membrane-bounded organelle  regulation of intracellular pH  extracellular exosome  sulfate transmembrane transport  chloride transmembrane transport  
NDEx NetworkSLC26A11
Atlas of Cancer Signalling NetworkSLC26A11
Wikipedia pathwaysSLC26A11
Orthology - Evolution
OrthoDB284129
GeneTree (enSembl)ENSG00000181045
Phylogenetic Trees/Animal Genes : TreeFamSLC26A11
HOVERGENQ86WA9
HOGENOMQ86WA9
Homologs : HomoloGeneSLC26A11
Homology/Alignments : Family Browser (UCSC)SLC26A11
Gene fusions - Rearrangements
Fusion : MitelmanENDOV/SLC26A11 [17q25.3/17q25.3]  [t(17;17)(q25;q25)]  
Fusion : MitelmanOAF/SLC26A11 [11q23.3/17q25.3]  [t(11;17)(q23;q25)]  
Fusion : MitelmanRNF213/SLC26A11 [17q25.3/17q25.3]  [t(17;17)(q25;q25)]  
Fusion : MitelmanSLC26A11/OAF [17q25.3/11q23.3]  [t(11;17)(q23;q25)]  
Fusion: TCGAENDOV 17q25.3 SLC26A11 17q25.3 BRCA
Fusion: TCGAOAF 11q23.3 SLC26A11 17q25.3 HNSC
Fusion: TCGARNF213 17q25.3 SLC26A11 17q25.3 BRCA
Fusion: TCGASLC26A11 17q25.3 OAF 11q23.3 HNSC
Fusion Cancer (Beijing)RNF213 [17q25.3]  -  SLC26A11 [17q25.3]  [FUSC001666]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC26A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A11
dbVarSLC26A11
ClinVarSLC26A11
1000_GenomesSLC26A11 
Exome Variant ServerSLC26A11
ExAC (Exome Aggregation Consortium)SLC26A11 (select the gene name)
Genetic variants : HAPMAP284129
Genomic Variants (DGV)SLC26A11 [DGVbeta]
DECIPHERSLC26A11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC26A11 
Mutations
ICGC Data PortalSLC26A11 
TCGA Data PortalSLC26A11 
Broad Tumor PortalSLC26A11
OASIS PortalSLC26A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC26A11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC26A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC26A11
DgiDB (Drug Gene Interaction Database)SLC26A11
DoCM (Curated mutations)SLC26A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC26A11 (select a term)
intoGenSLC26A11
Cancer3DSLC26A11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610117   
Orphanet
MedgenSLC26A11
Genetic Testing Registry SLC26A11
NextProtQ86WA9 [Medical]
TSGene284129
GENETestsSLC26A11
Target ValidationSLC26A11
Huge Navigator SLC26A11 [HugePedia]
snp3D : Map Gene to Disease284129
BioCentury BCIQSLC26A11
ClinGenSLC26A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284129
Chemical/Pharm GKB GenePA37888
Clinical trialSLC26A11
Miscellaneous
canSAR (ICR)SLC26A11 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A11
EVEXSLC26A11
GoPubMedSLC26A11
iHOPSLC26A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:55:56 CEST 2017

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