Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A3 (solute carrier family 26 member 3)

Identity

Other namesCLD
DRA
HGNC (Hugo) SLC26A3
LocusID (NCBI) 1811
Atlas_Id 42318
Location 7q31.1
Location_base_pair Starts at 107405912 and ends at 107443678 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A3   3018
Cards
Entrez_Gene (NCBI)SLC26A3  1811  solute carrier family 26 member 3
GeneCards (Weizmann)SLC26A3
Ensembl hg19 (Hinxton)ENSG00000091138 [Gene_View]  chr7:107405912-107443678 [Contig_View]  SLC26A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000091138 [Gene_View]  chr7:107405912-107443678 [Contig_View]  SLC26A3 [Vega]
ICGC DataPortalENSG00000091138
TCGA cBioPortalSLC26A3
AceView (NCBI)SLC26A3
Genatlas (Paris)SLC26A3
WikiGenes1811
SOURCE (Princeton)SLC26A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC26A3  -     chr7:107405912-107443678 -  7q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC26A3  -     7q31.1   [Description]    (hg38-Dec_2013)
EnsemblSLC26A3 - 7q31.1 [CytoView hg19]  SLC26A3 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBISLC26A3 [Mapview hg19]  SLC26A3 [Mapview hg38]
OMIM126650   214700   
Gene and transcription
Genbank (Entrez)AK300651 BC025671 BP262081 BX640837 DQ891550
RefSeq transcript (Entrez)NM_000111
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_008046 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)SLC26A3
Cluster EST : UnigeneHs.1650 [ NCBI ]
CGAP (NCI)Hs.1650
Alternative Splicing GalleryENSG00000091138
Gene ExpressionSLC26A3 [ NCBI-GEO ]   SLC26A3 [ EBI - ARRAY_EXPRESS ]   SLC26A3 [ SEEK ]   SLC26A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1811
GTEX Portal (Tissue expression)SLC26A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40879 (Uniprot)
NextProtP40879  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40879
Splice isoforms : SwissVarP40879 (Swissvar)
PhosPhoSitePlusP40879
Domaine pattern : Prosite (Expaxy)SLC26A (PS01130)    STAS (PS50801)   
Domains : Interpro (EBI)S04_transporter_CS    SLC26A/SulP_dom    SLC26A/SulP_fam    SLC26A3    STAS_dom   
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
DMDM Disease mutations1811
Blocks (Seattle)SLC26A3
SuperfamilyP40879
Human Protein AtlasENSG00000091138
Peptide AtlasP40879
HPRD00544
IPIIPI00031036   IPI00426063   IPI00925161   IPI00925630   
Protein Interaction databases
DIP (DOE-UCLA)P40879
IntAct (EBI)P40879
FunCoupENSG00000091138
BioGRIDSLC26A3
STRING (EMBL)SLC26A3
ZODIACSLC26A3
Ontologies - Pathways
QuickGOP40879
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  transcription cofactor activity  transporter activity  chloride channel activity  inorganic anion exchanger activity  protein binding  plasma membrane  integral component of plasma membrane  regulation of transcription, DNA-templated  ion transport  anion transport  excretion  secondary active sulfate transmembrane transporter activity  bicarbonate transmembrane transporter activity  bicarbonate transmembrane transporter activity  chloride transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  membrane  apical plasma membrane  oxalate transmembrane transporter activity  oxalate transport  brush border membrane  regulation of membrane potential  sperm capacitation  regulation of intracellular pH  intracellular pH elevation  membrane hyperpolarization  cellular response to cAMP  sperm midpiece  sulfate transmembrane transport  sulfate transmembrane transport  chloride transmembrane transport  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  transcription cofactor activity  transporter activity  chloride channel activity  inorganic anion exchanger activity  protein binding  plasma membrane  integral component of plasma membrane  regulation of transcription, DNA-templated  ion transport  anion transport  excretion  secondary active sulfate transmembrane transporter activity  bicarbonate transmembrane transporter activity  bicarbonate transmembrane transporter activity  chloride transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  membrane  apical plasma membrane  oxalate transmembrane transporter activity  oxalate transport  brush border membrane  regulation of membrane potential  sperm capacitation  regulation of intracellular pH  intracellular pH elevation  membrane hyperpolarization  cellular response to cAMP  sperm midpiece  sulfate transmembrane transport  sulfate transmembrane transport  chloride transmembrane transport  regulation of nucleic acid-templated transcription  
Pathways : KEGGPancreatic secretion    Mineral absorption   
NDEx Network
Atlas of Cancer Signalling NetworkSLC26A3
Wikipedia pathwaysSLC26A3
Orthology - Evolution
OrthoDB1811
GeneTree (enSembl)ENSG00000091138
Phylogenetic Trees/Animal Genes : TreeFamSLC26A3
Homologs : HomoloGeneSLC26A3
Homology/Alignments : Family Browser (UCSC)SLC26A3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC26A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A3
dbVarSLC26A3
ClinVarSLC26A3
1000_GenomesSLC26A3 
Exome Variant ServerSLC26A3
ExAC (Exome Aggregation Consortium)SLC26A3 (select the gene name)
Genetic variants : HAPMAP1811
Genomic Variants (DGV)SLC26A3 [DGVbeta]
Mutations
ICGC Data PortalSLC26A3 
TCGA Data PortalSLC26A3 
Broad Tumor PortalSLC26A3
OASIS PortalSLC26A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC26A3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC26A3
DgiDB (Drug Gene Interaction Database)SLC26A3
DoCM (Curated mutations)SLC26A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC26A3 (select a term)
intoGenSLC26A3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)7:107405912-107443678  ENSG00000091138
CONAN: Copy Number AnalysisSLC26A3 
Mutations and Diseases : HGMDSLC26A3
OMIM126650    214700   
MedgenSLC26A3
Genetic Testing Registry SLC26A3
NextProtP40879 [Medical]
TSGene1811
GENETestsSLC26A3
Huge Navigator SLC26A3 [HugePedia]
snp3D : Map Gene to Disease1811
BioCentury BCIQSLC26A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1811
Chemical/Pharm GKB GenePA35044
Clinical trialSLC26A3
Miscellaneous
canSAR (ICR)SLC26A3 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A3
EVEXSLC26A3
GoPubMedSLC26A3
iHOPSLC26A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 19:06:02 CEST 2016

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