Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A3 (solute carrier family 26 (anion exchanger), member 3)

Identity

Other namesCLD
DRA
HGNC (Hugo) SLC26A3
LocusID (NCBI) 1811
Location 7q31.1
Location_base_pair Starts at 107405912 and ends at 107443678 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC26A3   3018
Cards
Entrez_Gene (NCBI)SLC26A3  1811  solute carrier family 26 (anion exchanger), member 3
GeneCards (Weizmann)SLC26A3
Ensembl (Hinxton)ENSG00000091138 [Gene_View]  chr7:107405912-107443678 [Contig_View]  SLC26A3 [Vega]
ICGC DataPortalENSG00000091138
AceView (NCBI)SLC26A3
Genatlas (Paris)SLC26A3
WikiGenes1811
SOURCE (Princeton)NM_000111
Genomic and cartography
GoldenPath (UCSC)SLC26A3  -  7q31.1   chr7:107405912-107443678 -  7q31.1   [Description]    (hg19-Feb_2009)
EnsemblSLC26A3 - 7q31.1 [CytoView]
Mapping of homologs : NCBISLC26A3 [Mapview]
OMIM126650   214700   
Gene and transcription
Genbank (Entrez)AK300651 BC025671 BP262081 BX640837 DQ891550
RefSeq transcript (Entrez)NM_000111
RefSeq genomic (Entrez)AC_000139 NC_000007 NC_018918 NG_008046 NT_007933 NW_001839071 NW_004929332
Consensus coding sequences : CCDS (NCBI)SLC26A3
Cluster EST : UnigeneHs.1650 [ NCBI ]
CGAP (NCI)Hs.1650
Alternative Splicing : Fast-db (Paris)GSHG0028483
Alternative Splicing GalleryENSG00000091138
Gene ExpressionSLC26A3 [ NCBI-GEO ]     SLC26A3 [ SEEK ]   SLC26A3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40879 (Uniprot)
NextProtP40879  [Medical]
With graphics : InterProP40879
Splice isoforms : SwissVarP40879 (Swissvar)
Domaine pattern : Prosite (Expaxy)SLC26A (PS01130)    STAS (PS50801)   
Domains : Interpro (EBI)S04_transporter_CS    STAS_dom    SulP_transpt    Sulph_transpt   
Related proteins : CluSTrP40879
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
DMDM Disease mutations1811
Blocks (Seattle)P40879
Human Protein AtlasENSG00000091138
Peptide AtlasP40879
HPRD00544
IPIIPI00031036   IPI00426063   IPI00925161   IPI00925630   
Protein Interaction databases
DIP (DOE-UCLA)P40879
IntAct (EBI)P40879
FunCoupENSG00000091138
BioGRIDSLC26A3
InParanoidP40879
Interologous Interaction database P40879
IntegromeDBSLC26A3
STRING (EMBL)SLC26A3
Ontologies - Pathways
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  transcription cofactor activity  transporter activity  protein binding  plasma membrane  regulation of transcription, DNA-templated  ion transport  anion transport  excretion  secondary active sulfate transmembrane transporter activity  bicarbonate transmembrane transporter activity  chloride transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  membrane  integral component of membrane  apical plasma membrane  brush border membrane  sperm capacitation  intracellular pH elevation  transmembrane transport  membrane hyperpolarization  cellular response to cAMP  sperm midpiece  sulfate transmembrane transport  chloride transmembrane transport  chloride transmembrane transport  regulation of RNA biosynthetic process  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  transcription cofactor activity  transporter activity  protein binding  plasma membrane  regulation of transcription, DNA-templated  ion transport  anion transport  excretion  secondary active sulfate transmembrane transporter activity  bicarbonate transmembrane transporter activity  chloride transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  membrane  integral component of membrane  apical plasma membrane  brush border membrane  sperm capacitation  intracellular pH elevation  transmembrane transport  membrane hyperpolarization  cellular response to cAMP  sperm midpiece  sulfate transmembrane transport  chloride transmembrane transport  chloride transmembrane transport  regulation of RNA biosynthetic process  
Pathways : KEGGPancreatic secretion    Mineral absorption   
Protein Interaction DatabaseSLC26A3
Wikipedia pathwaysSLC26A3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC26A3
SNP (GeneSNP Utah)SLC26A3
SNP : HGBaseSLC26A3
Genetic variants : HAPMAPSLC26A3
1000_GenomesSLC26A3 
ICGC programENSG00000091138 
CONAN: Copy Number AnalysisSLC26A3 
Somatic Mutations in Cancer : COSMICSLC26A3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDSLC26A3
OMIM126650    214700   
MedgenSLC26A3
GENETestsSLC26A3
Disease Genetic AssociationSLC26A3
Huge Navigator SLC26A3 [HugePedia]  SLC26A3 [HugeCancerGEM]
Genomic VariantsSLC26A3  SLC26A3 [DGVbeta]
Exome VariantSLC26A3
dbVarSLC26A3
ClinVarSLC26A3
snp3D : Map Gene to Disease1811
General knowledge
Homologs : HomoloGeneSLC26A3
Homology/Alignments : Family Browser (UCSC)SLC26A3
Phylogenetic Trees/Animal Genes : TreeFamSLC26A3
Chemical/Protein Interactions : CTD1811
Chemical/Pharm GKB GenePA35044
Clinical trialSLC26A3
Cancer Resource (Charite)ENSG00000091138
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
CoreMineSLC26A3
iHOPSLC26A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:16:57 CEST 2014

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