Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A4-AS1 (SLC26A4 antisense RNA 1)

Identity

Alias_namesSLC26A4 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SLC26A4-AS1
LocusID (NCBI) 286002
Atlas_Id 73374
Location 7q22.3  [Link to chromosome band 7q22]
Location_base_pair Starts at 107656516 and ends at 107661798 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A4-AS1   22385
Cards
Entrez_Gene (NCBI)SLC26A4-AS1  286002  SLC26A4 antisense RNA 1
Aliases
GeneCards (Weizmann)SLC26A4-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:107656516-107661798 [Contig_View]  SLC26A4-AS1 [Vega]
TCGA cBioPortalSLC26A4-AS1
AceView (NCBI)SLC26A4-AS1
Genatlas (Paris)SLC26A4-AS1
WikiGenes286002
SOURCE (Princeton)SLC26A4-AS1
Genetics Home Reference (NIH)SLC26A4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC26A4-AS1  -     chr7:107656516-107661798 -  7q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC26A4-AS1  -     7q22.3   [Description]    (hg19-Feb_2009)
EnsemblSLC26A4-AS1 - 7q22.3 [CytoView hg19]  SLC26A4-AS1 - 7q22.3 [CytoView hg38]
Mapping of homologs : NCBISLC26A4-AS1 [Mapview hg19]  SLC26A4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091347 BC022493 BC037315 BC047092 BC052342
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC26A4-AS1
Cluster EST : UnigeneHs.512611 [ NCBI ]
CGAP (NCI)Hs.512611
Gene ExpressionSLC26A4-AS1 [ NCBI-GEO ]   SLC26A4-AS1 [ EBI - ARRAY_EXPRESS ]   SLC26A4-AS1 [ SEEK ]   SLC26A4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)286002
GTEX Portal (Tissue expression)SLC26A4-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC26A4-AS1
DMDM Disease mutations286002
Blocks (Seattle)SLC26A4-AS1
IPIIPI00749448   
Protein Interaction databases
BioGRIDSLC26A4-AS1
STRING (EMBL)SLC26A4-AS1
ZODIACSLC26A4-AS1
Ontologies - Pathways
Huge Navigator SLC26A4-AS1 [HugePedia]
snp3D : Map Gene to Disease286002
BioCentury BCIQSLC26A4-AS1
ClinGenSLC26A4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286002
Clinical trialSLC26A4-AS1
Miscellaneous
canSAR (ICR)SLC26A4-AS1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A4-AS1
EVEXSLC26A4-AS1
GoPubMedSLC26A4-AS1
iHOPSLC26A4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:29 CET 2017

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