Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A4 (solute carrier family 26 (anion exchanger), member 4)

Identity

Other namesDFNB4
EVA
PDS
TDH2B
HGNC (Hugo) SLC26A4
LocusID (NCBI) 5172
Location 7q22.3
Location_base_pair Starts at 107301080 and ends at 107358252 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC26A4   8818
Cards
Entrez_Gene (NCBI)SLC26A4  5172  solute carrier family 26 (anion exchanger), member 4
GeneCards (Weizmann)SLC26A4
Ensembl (Hinxton)ENSG00000091137 [Gene_View]  chr7:107301080-107358252 [Contig_View]  SLC26A4 [Vega]
ICGC DataPortalENSG00000091137
AceView (NCBI)SLC26A4
Genatlas (Paris)SLC26A4
WikiGenes5172
SOURCE (Princeton)NM_000441
Genomic and cartography
GoldenPath (UCSC)SLC26A4  -  7q22.3   chr7:107301080-107358252 +  7q22.3   [Description]    (hg19-Feb_2009)
EnsemblSLC26A4 - 7q22.3 [CytoView]
Mapping of homologs : NCBISLC26A4 [Mapview]
OMIM274600   600791   605646   
Gene and transcription
Genbank (Entrez)AF030880 AK294388 AK298543 AK300604 BC148375
RefSeq transcript (Entrez)NM_000441
RefSeq genomic (Entrez)AC_000139 NC_000007 NC_018918 NG_008489 NT_007933 NW_001839071 NW_004929332
Consensus coding sequences : CCDS (NCBI)SLC26A4
Cluster EST : UnigeneHs.571246 [ NCBI ]
CGAP (NCI)Hs.571246
Alternative Splicing : Fast-db (Paris)GSHG0027643
Alternative Splicing GalleryENSG00000091137
Gene ExpressionSLC26A4 [ NCBI-GEO ]     SLC26A4 [ SEEK ]   SLC26A4 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43511 (Uniprot)
NextProtO43511  [Medical]
With graphics : InterProO43511
Splice isoforms : SwissVarO43511 (Swissvar)
Domaine pattern : Prosite (Expaxy)SLC26A (PS01130)    STAS (PS50801)   
Domains : Interpro (EBI)S04_transporter_CS    STAS_dom    SulP_transpt    Sulph_transpt   
Related proteins : CluSTrO43511
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
DMDM Disease mutations5172
Blocks (Seattle)O43511
Human Protein AtlasENSG00000091137
Peptide AtlasO43511
HPRD05735
IPIIPI00012842   IPI01010356   IPI01014665   IPI01010760   IPI00925445   
Protein Interaction databases
DIP (DOE-UCLA)O43511
IntAct (EBI)O43511
FunCoupENSG00000091137
BioGRIDSLC26A4
IntegromeDBSLC26A4
STRING (EMBL)SLC26A4
Ontologies - Pathways
QuickGOO43511
Ontology : AmiGOplasma membrane  ion transport  regulation of pH  sensory perception of sound  secondary active sulfate transmembrane transporter activity  sulfate transport  chloride transmembrane transporter activity  iodide transmembrane transporter activity  sulfate transmembrane transporter activity  inorganic anion transport  iodide transport  integral component of membrane  apical plasma membrane  apical plasma membrane  brush border membrane  regulation of protein localization  transmembrane transport  extracellular vesicular exosome  sulfate transmembrane transport  sulfate transmembrane transport  chloride transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIplasma membrane  ion transport  regulation of pH  sensory perception of sound  secondary active sulfate transmembrane transporter activity  sulfate transport  chloride transmembrane transporter activity  iodide transmembrane transporter activity  sulfate transmembrane transporter activity  inorganic anion transport  iodide transport  integral component of membrane  apical plasma membrane  apical plasma membrane  brush border membrane  regulation of protein localization  transmembrane transport  extracellular vesicular exosome  sulfate transmembrane transport  sulfate transmembrane transport  chloride transmembrane transport  chloride transmembrane transport  
Pathways : KEGGThyroid hormone synthesis   
Protein Interaction DatabaseSLC26A4
Wikipedia pathwaysSLC26A4
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC26A4
SNP (GeneSNP Utah)SLC26A4
SNP : HGBaseSLC26A4
Genetic variants : HAPMAPSLC26A4
1000_GenomesSLC26A4 
ICGC programENSG00000091137 
CONAN: Copy Number AnalysisSLC26A4 
Somatic Mutations in Cancer : COSMICSLC26A4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Retinal and hearing impairment genetic mutation database
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
DECIPHER (Syndromes)7:107301080-107358252
Mutations and Diseases : HGMDSLC26A4
OMIM274600    600791    605646   
MedgenSLC26A4
GENETestsSLC26A4
Disease Genetic AssociationSLC26A4
Huge Navigator SLC26A4 [HugePedia]  SLC26A4 [HugeCancerGEM]
Genomic VariantsSLC26A4  SLC26A4 [DGVbeta]
Exome VariantSLC26A4
dbVarSLC26A4
ClinVarSLC26A4
snp3D : Map Gene to Disease5172
General knowledge
Homologs : HomoloGeneSLC26A4
Homology/Alignments : Family Browser (UCSC)SLC26A4
Phylogenetic Trees/Animal Genes : TreeFamSLC26A4
Chemical/Protein Interactions : CTD5172
Chemical/Pharm GKB GenePA35506
Clinical trialSLC26A4
Cancer Resource (Charite)ENSG00000091137
Other databases
Probes
Litterature
PubMed183 Pubmed reference(s) in Entrez
CoreMineSLC26A4
GoPubMedSLC26A4
iHOPSLC26A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:57:10 CET 2014

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