Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A7 (solute carrier family 26 member 7)

Identity

Alias_namessolute carrier family 26, member 7
solute carrier family 26 (anion exchanger), member 7
Alias_symbol (synonym)SUT2
Other alias
HGNC (Hugo) SLC26A7
LocusID (NCBI) 115111
Atlas_Id 73375
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 91209494 and ends at 91398154 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADGRL3 (4q13.1) / SLC26A7 (8q21.3)LRIG1 (3p14.1) / SLC26A7 (8q21.3)NDUFS3 (11p11.2) / SLC26A7 (8q21.3)
RAI14 (5p13.2) / SLC26A7 (8q21.3)SLC26A7 (8q21.3) / TDRD3 (13q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A7   14467
Cards
Entrez_Gene (NCBI)SLC26A7  115111  solute carrier family 26 member 7
AliasesSUT2
GeneCards (Weizmann)SLC26A7
Ensembl hg19 (Hinxton)ENSG00000147606 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147606 [Gene_View]  chr8:91209494-91398154 [Contig_View]  SLC26A7 [Vega]
ICGC DataPortalENSG00000147606
TCGA cBioPortalSLC26A7
AceView (NCBI)SLC26A7
Genatlas (Paris)SLC26A7
WikiGenes115111
SOURCE (Princeton)SLC26A7
Genetics Home Reference (NIH)SLC26A7
Genomic and cartography
GoldenPath hg38 (UCSC)SLC26A7  -     chr8:91209494-91398154 +  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC26A7  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblSLC26A7 - 8q21.3 [CytoView hg19]  SLC26A7 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBISLC26A7 [Mapview hg19]  SLC26A7 [Mapview hg38]
OMIM608479   
Gene and transcription
Genbank (Entrez)AF331521 AI758950 AJ413228 AJ413229 AJ413230
RefSeq transcript (Entrez)NM_001282356 NM_001282357 NM_052832 NM_134266
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC26A7
Cluster EST : UnigeneHs.354013 [ NCBI ]
CGAP (NCI)Hs.354013
Alternative Splicing GalleryENSG00000147606
Gene ExpressionSLC26A7 [ NCBI-GEO ]   SLC26A7 [ EBI - ARRAY_EXPRESS ]   SLC26A7 [ SEEK ]   SLC26A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115111
GTEX Portal (Tissue expression)SLC26A7
Human Protein AtlasENSG00000147606-SLC26A7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TE54   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TE54  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TE54
Splice isoforms : SwissVarQ8TE54
PhosPhoSitePlusQ8TE54
Domaine pattern : Prosite (Expaxy)STAS (PS50801)   
Domains : Interpro (EBI)SLC26A/SulP_dom    SLC26A/SulP_fam    SLC26A7    STAS_dom   
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
Conserved Domain (NCBI)SLC26A7
DMDM Disease mutations115111
Blocks (Seattle)SLC26A7
SuperfamilyQ8TE54
Human Protein Atlas [tissue]ENSG00000147606-SLC26A7 [tissue]
Peptide AtlasQ8TE54
HPRD10533
IPIIPI00150366   IPI00152632   IPI00981212   IPI00981879   IPI00980558   
Protein Interaction databases
DIP (DOE-UCLA)Q8TE54
IntAct (EBI)Q8TE54
FunCoupENSG00000147606
BioGRIDSLC26A7
STRING (EMBL)SLC26A7
ZODIACSLC26A7
Ontologies - Pathways
QuickGOQ8TE54
Ontology : AmiGOgastric acid secretion  chloride channel activity  chloride channel activity  cytoplasm  endosome  plasma membrane  integral component of plasma membrane  ion transport  anion transport  chloride transport  secondary active sulfate transmembrane transporter activity  sulfate transport  bicarbonate transmembrane transporter activity  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  bicarbonate transport  basolateral plasma membrane  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  regulation of intracellular pH  recycling endosome membrane  sulfate transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIgastric acid secretion  chloride channel activity  chloride channel activity  cytoplasm  endosome  plasma membrane  integral component of plasma membrane  ion transport  anion transport  chloride transport  secondary active sulfate transmembrane transporter activity  sulfate transport  bicarbonate transmembrane transporter activity  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  bicarbonate transport  basolateral plasma membrane  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  regulation of intracellular pH  recycling endosome membrane  sulfate transmembrane transport  chloride transmembrane transport  
Pathways : KEGGGastric acid secretion   
NDEx NetworkSLC26A7
Atlas of Cancer Signalling NetworkSLC26A7
Wikipedia pathwaysSLC26A7
Orthology - Evolution
OrthoDB115111
GeneTree (enSembl)ENSG00000147606
Phylogenetic Trees/Animal Genes : TreeFamSLC26A7
HOVERGENQ8TE54
HOGENOMQ8TE54
Homologs : HomoloGeneSLC26A7
Homology/Alignments : Family Browser (UCSC)SLC26A7
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC26A7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC26A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A7
dbVarSLC26A7
ClinVarSLC26A7
1000_GenomesSLC26A7 
Exome Variant ServerSLC26A7
ExAC (Exome Aggregation Consortium)ENSG00000147606
GNOMAD BrowserENSG00000147606
Genetic variants : HAPMAP115111
Genomic Variants (DGV)SLC26A7 [DGVbeta]
DECIPHERSLC26A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC26A7 
Mutations
ICGC Data PortalSLC26A7 
TCGA Data PortalSLC26A7 
Broad Tumor PortalSLC26A7
OASIS PortalSLC26A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC26A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC26A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC26A7
DgiDB (Drug Gene Interaction Database)SLC26A7
DoCM (Curated mutations)SLC26A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC26A7 (select a term)
intoGenSLC26A7
Cancer3DSLC26A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608479   
Orphanet
MedgenSLC26A7
Genetic Testing Registry SLC26A7
NextProtQ8TE54 [Medical]
TSGene115111
GENETestsSLC26A7
Target ValidationSLC26A7
Huge Navigator SLC26A7 [HugePedia]
snp3D : Map Gene to Disease115111
BioCentury BCIQSLC26A7
ClinGenSLC26A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115111
Chemical/Pharm GKB GenePA37884
Clinical trialSLC26A7
Miscellaneous
canSAR (ICR)SLC26A7 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A7
EVEXSLC26A7
GoPubMedSLC26A7
iHOPSLC26A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:29 CET 2017

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