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SLC26A8 (solute carrier family 26 member 8)

Identity

Alias_namessolute carrier family 26, member 8
solute carrier family 26 (anion exchanger), member 8
Other aliasSPGF3
TAT1
HGNC (Hugo) SLC26A8
LocusID (NCBI) 116369
Atlas_Id 73376
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 35943514 and ends at 36024528 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A8   14468
Cards
Entrez_Gene (NCBI)SLC26A8  116369  solute carrier family 26 member 8
AliasesSPGF3; TAT1
GeneCards (Weizmann)SLC26A8
Ensembl hg19 (Hinxton)ENSG00000112053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112053 [Gene_View]  ENSG00000112053 [Sequence]  chr6:35943514-36024528 [Contig_View]  SLC26A8 [Vega]
ICGC DataPortalENSG00000112053
TCGA cBioPortalSLC26A8
AceView (NCBI)SLC26A8
Genatlas (Paris)SLC26A8
WikiGenes116369
SOURCE (Princeton)SLC26A8
Genetics Home Reference (NIH)SLC26A8
Genomic and cartography
GoldenPath hg38 (UCSC)SLC26A8  -     chr6:35943514-36024528 -  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC26A8  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblSLC26A8 - 6p21.31 [CytoView hg19]  SLC26A8 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBISLC26A8 [Mapview hg19]  SLC26A8 [Mapview hg38]
OMIM606766   608480   
Gene and transcription
Genbank (Entrez)AF314959 AF331522 AI015633 AK055314 AK057276
RefSeq transcript (Entrez)NM_001193476 NM_052961 NM_138718
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC26A8
Cluster EST : UnigeneHs.435836 [ NCBI ]
CGAP (NCI)Hs.435836
Alternative Splicing GalleryENSG00000112053
Gene ExpressionSLC26A8 [ NCBI-GEO ]   SLC26A8 [ EBI - ARRAY_EXPRESS ]   SLC26A8 [ SEEK ]   SLC26A8 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116369
GTEX Portal (Tissue expression)SLC26A8
Human Protein AtlasENSG00000112053-SLC26A8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RN1
Splice isoforms : SwissVarQ96RN1
PhosPhoSitePlusQ96RN1
Domaine pattern : Prosite (Expaxy)STAS (PS50801)   
Domains : Interpro (EBI)SLC26A/SulP_dom    SLC26A/SulP_fam    SLC26A8    STAS_dom   
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
Conserved Domain (NCBI)SLC26A8
DMDM Disease mutations116369
Blocks (Seattle)SLC26A8
SuperfamilyQ96RN1
Human Protein Atlas [tissue]ENSG00000112053-SLC26A8 [tissue]
Peptide AtlasQ96RN1
HPRD12241
IPIIPI00066333   IPI00290911   IPI00885155   IPI00885156   IPI00946739   IPI00946552   
Protein Interaction databases
DIP (DOE-UCLA)Q96RN1
IntAct (EBI)Q96RN1
FunCoupENSG00000112053
BioGRIDSLC26A8
STRING (EMBL)SLC26A8
ZODIACSLC26A8
Ontologies - Pathways
QuickGOQ96RN1
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                            
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                            
NDEx NetworkSLC26A8
Atlas of Cancer Signalling NetworkSLC26A8
Wikipedia pathwaysSLC26A8
Orthology - Evolution
OrthoDB116369
GeneTree (enSembl)ENSG00000112053
Phylogenetic Trees/Animal Genes : TreeFamSLC26A8
HOVERGENQ96RN1
HOGENOMQ96RN1
Homologs : HomoloGeneSLC26A8
Homology/Alignments : Family Browser (UCSC)SLC26A8
Gene fusions - Rearrangements
Fusion : QuiverSLC26A8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC26A8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A8
dbVarSLC26A8
ClinVarSLC26A8
1000_GenomesSLC26A8 
Exome Variant ServerSLC26A8
ExAC (Exome Aggregation Consortium)ENSG00000112053
GNOMAD BrowserENSG00000112053
Varsome BrowserSLC26A8
Genetic variants : HAPMAP116369
Genomic Variants (DGV)SLC26A8 [DGVbeta]
DECIPHERSLC26A8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC26A8 
Mutations
ICGC Data PortalSLC26A8 
TCGA Data PortalSLC26A8 
Broad Tumor PortalSLC26A8
OASIS PortalSLC26A8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC26A8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC26A8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC26A8
DgiDB (Drug Gene Interaction Database)SLC26A8
DoCM (Curated mutations)SLC26A8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC26A8 (select a term)
intoGenSLC26A8
Cancer3DSLC26A8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606766    608480   
Orphanet20358   
DisGeNETSLC26A8
MedgenSLC26A8
Genetic Testing Registry SLC26A8
NextProtQ96RN1 [Medical]
TSGene116369
GENETestsSLC26A8
Target ValidationSLC26A8
Huge Navigator SLC26A8 [HugePedia]
snp3D : Map Gene to Disease116369
BioCentury BCIQSLC26A8
ClinGenSLC26A8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116369
Chemical/Pharm GKB GenePA37885
Clinical trialSLC26A8
Miscellaneous
canSAR (ICR)SLC26A8 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A8
EVEXSLC26A8
GoPubMedSLC26A8
iHOPSLC26A8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:29:21 CEST 2018

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