Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A9 (solute carrier family 26 member 9)

Identity

Alias_namessolute carrier family 26, member 9
solute carrier family 26 (anion exchanger), member 9
Other alias-
HGNC (Hugo) SLC26A9
LocusID (NCBI) 115019
Atlas_Id 73377
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 205913048 and ends at 205943460 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ELK4 (1q32.1) / SLC26A9 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A9   14469
Cards
Entrez_Gene (NCBI)SLC26A9  115019  solute carrier family 26 member 9
Aliases
GeneCards (Weizmann)SLC26A9
Ensembl hg19 (Hinxton)ENSG00000174502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174502 [Gene_View]  chr1:205913048-205943460 [Contig_View]  SLC26A9 [Vega]
ICGC DataPortalENSG00000174502
TCGA cBioPortalSLC26A9
AceView (NCBI)SLC26A9
Genatlas (Paris)SLC26A9
WikiGenes115019
SOURCE (Princeton)SLC26A9
Genetics Home Reference (NIH)SLC26A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC26A9  -     chr1:205913048-205943460 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC26A9  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblSLC26A9 - 1q32.1 [CytoView hg19]  SLC26A9 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBISLC26A9 [Mapview hg19]  SLC26A9 [Mapview hg38]
OMIM608481   
Gene and transcription
Genbank (Entrez)AF314958 AF331525 AK091876 AK127491 BC037978
RefSeq transcript (Entrez)NM_001142600 NM_052934 NM_134325
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC26A9
Cluster EST : UnigeneHs.164073 [ NCBI ]
CGAP (NCI)Hs.164073
Alternative Splicing GalleryENSG00000174502
Gene ExpressionSLC26A9 [ NCBI-GEO ]   SLC26A9 [ EBI - ARRAY_EXPRESS ]   SLC26A9 [ SEEK ]   SLC26A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115019
GTEX Portal (Tissue expression)SLC26A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7LBE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7LBE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7LBE3
Splice isoforms : SwissVarQ7LBE3
PhosPhoSitePlusQ7LBE3
Domaine pattern : Prosite (Expaxy)STAS (PS50801)   
Domains : Interpro (EBI)SLC26A/SulP_dom    SLC26A/SulP_fam    SLC26A9    STAS_dom   
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
Conserved Domain (NCBI)SLC26A9
DMDM Disease mutations115019
Blocks (Seattle)SLC26A9
SuperfamilyQ7LBE3
Human Protein AtlasENSG00000174502
Peptide AtlasQ7LBE3
HPRD12242
IPIIPI00045438   IPI00102498   IPI00645872   
Protein Interaction databases
DIP (DOE-UCLA)Q7LBE3
IntAct (EBI)Q7LBE3
FunCoupENSG00000174502
BioGRIDSLC26A9
STRING (EMBL)SLC26A9
ZODIACSLC26A9
Ontologies - Pathways
QuickGOQ7LBE3
Ontology : AmiGOchloride channel activity  chloride channel activity  plasma membrane  integral component of plasma membrane  ion transport  anion transport  chloride transport  secondary active sulfate transmembrane transporter activity  cell surface  positive regulation of gene expression  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  apical plasma membrane  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  ATPase binding  regulation of intracellular pH  extracellular exosome  sulfate transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIchloride channel activity  chloride channel activity  plasma membrane  integral component of plasma membrane  ion transport  anion transport  chloride transport  secondary active sulfate transmembrane transporter activity  cell surface  positive regulation of gene expression  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  apical plasma membrane  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  ATPase binding  regulation of intracellular pH  extracellular exosome  sulfate transmembrane transport  chloride transmembrane transport  
Pathways : KEGGMineral absorption   
NDEx NetworkSLC26A9
Atlas of Cancer Signalling NetworkSLC26A9
Wikipedia pathwaysSLC26A9
Orthology - Evolution
OrthoDB115019
GeneTree (enSembl)ENSG00000174502
Phylogenetic Trees/Animal Genes : TreeFamSLC26A9
HOVERGENQ7LBE3
HOGENOMQ7LBE3
Homologs : HomoloGeneSLC26A9
Homology/Alignments : Family Browser (UCSC)SLC26A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC26A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A9
dbVarSLC26A9
ClinVarSLC26A9
1000_GenomesSLC26A9 
Exome Variant ServerSLC26A9
ExAC (Exome Aggregation Consortium)SLC26A9 (select the gene name)
Genetic variants : HAPMAP115019
Genomic Variants (DGV)SLC26A9 [DGVbeta]
DECIPHERSLC26A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC26A9 
Mutations
ICGC Data PortalSLC26A9 
TCGA Data PortalSLC26A9 
Broad Tumor PortalSLC26A9
OASIS PortalSLC26A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC26A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC26A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC26A9
DgiDB (Drug Gene Interaction Database)SLC26A9
DoCM (Curated mutations)SLC26A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC26A9 (select a term)
intoGenSLC26A9
Cancer3DSLC26A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608481   
Orphanet
MedgenSLC26A9
Genetic Testing Registry SLC26A9
NextProtQ7LBE3 [Medical]
TSGene115019
GENETestsSLC26A9
Huge Navigator SLC26A9 [HugePedia]
snp3D : Map Gene to Disease115019
BioCentury BCIQSLC26A9
ClinGenSLC26A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115019
Chemical/Pharm GKB GenePA37886
Clinical trialSLC26A9
Miscellaneous
canSAR (ICR)SLC26A9 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A9
EVEXSLC26A9
GoPubMedSLC26A9
iHOPSLC26A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:53:29 CEST 2017

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