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SLC27A1 (solute carrier family 27 member 1)

Identity

Alias (NCBI)ACSVL5
FATP
FATP-1
FATP1
HGNC (Hugo) SLC27A1
HGNC Alias symbFATP1
FATP
MGC71751
FLJ00336
ACSVL5
HGNC Previous namesolute carrier family 27 (fatty acid transporter), member 1
LocusID (NCBI) 376497
Atlas_Id 73378
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17470524 and ends at 17506168 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KCNN1 (19p13.11)::SLC27A1 (19p13.11)ZDHHC24 (11q13.2)::SLC27A1 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC27A1   10995
Cards
Entrez_Gene (NCBI)SLC27A1    solute carrier family 27 member 1
AliasesACSVL5; FATP; FATP-1; FATP1
GeneCards (Weizmann)SLC27A1
Ensembl hg19 (Hinxton)ENSG00000130304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130304 [Gene_View]  ENSG00000130304 [Sequence]  chr19:17470524-17506168 [Contig_View]  SLC27A1 [Vega]
ICGC DataPortalENSG00000130304
TCGA cBioPortalSLC27A1
AceView (NCBI)SLC27A1
Genatlas (Paris)SLC27A1
SOURCE (Princeton)SLC27A1
Genetics Home Reference (NIH)SLC27A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC27A1  -     chr19:17470524-17506168 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC27A1  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathSLC27A1 - 19p13.11 [CytoView hg19]  SLC27A1 - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000130304
Genome Data Viewer NCBISLC27A1 [Mapview hg19]  
OMIM600691   
Gene and transcription
Genbank (Entrez)AK131101 AK294238 AK296355 AK299852 AK315935
RefSeq transcript (Entrez)NM_198580
Consensus coding sequences : CCDS (NCBI)SLC27A1
Gene ExpressionSLC27A1 [ NCBI-GEO ]   SLC27A1 [ EBI - ARRAY_EXPRESS ]   SLC27A1 [ SEEK ]   SLC27A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC27A1 [ Firebrowse - Broad ]
GenevisibleExpression of SLC27A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)376497
GTEX Portal (Tissue expression)SLC27A1
Human Protein AtlasENSG00000130304-SLC27A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PCB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PCB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PCB7
PhosPhoSitePlusQ6PCB7
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig    AMP-dep_Synthh-like_sf    FATP1   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)SLC27A1
SuperfamilyQ6PCB7
AlphaFold pdb e-kbQ6PCB7   
Human Protein Atlas [tissue]ENSG00000130304-SLC27A1 [tissue]
HPRD11863
Protein Interaction databases
DIP (DOE-UCLA)Q6PCB7
IntAct (EBI)Q6PCB7
BioGRIDSLC27A1
STRING (EMBL)SLC27A1
ZODIACSLC27A1
Ontologies - Pathways
QuickGOQ6PCB7
Ontology : AmiGOnucleotide binding  medium-chain fatty acid transport  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  long-chain fatty acid-CoA ligase activity  long-chain fatty acid transporter activity  long-chain fatty acid transporter activity  long-chain fatty acid transporter activity  protein binding  mitochondrial inner membrane  endoplasmic reticulum  plasma membrane  plasma membrane  plasma membrane  integral component of plasma membrane  phosphatidylethanolamine biosynthetic process  phosphatidylethanolamine biosynthetic process  phosphatidic acid biosynthetic process  phosphatidic acid biosynthetic process  phosphatidylglycerol biosynthetic process  phosphatidylcholine biosynthetic process  phosphatidylcholine biosynthetic process  phosphatidylserine biosynthetic process  phosphatidylserine biosynthetic process  phosphatidylinositol biosynthetic process  phosphatidylinositol biosynthetic process  response to cold  basal plasma membrane  positive regulation of triglyceride biosynthetic process  biotin transmembrane transporter activity  fatty acid transmembrane transporter activity  efflux transmembrane transporter activity  efflux transmembrane transporter activity  biotin transport  long-chain fatty acid transport  long-chain fatty acid transport  long-chain fatty acid transport  long-chain fatty acid import across plasma membrane  long-chain fatty acid import across plasma membrane  membrane  regulation of metabolic process  positive regulation of heat generation  very long-chain fatty acid-CoA ligase activity  cardiolipin biosynthetic process  cardiolipin biosynthetic process  response to insulin  adiponectin-activated signaling pathway  identical protein binding  glucose import in response to insulin stimulus  long-chain fatty acid import into cell  long-chain fatty acid import into cell  long-chain fatty acid import into cell  arachidonate-CoA ligase activity  negative regulation of phospholipid biosynthetic process  negative regulation of phospholipid biosynthetic process  positive regulation of protein serine/threonine kinase activity  oleoyl-CoA ligase activity  export across plasma membrane  export across plasma membrane  transport across blood-brain barrier  oleate transmembrane transporter activity  biotin import across plasma membrane  lipid transport across blood-brain barrier  
Ontology : EGO-EBInucleotide binding  medium-chain fatty acid transport  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  long-chain fatty acid-CoA ligase activity  long-chain fatty acid transporter activity  long-chain fatty acid transporter activity  long-chain fatty acid transporter activity  protein binding  mitochondrial inner membrane  endoplasmic reticulum  plasma membrane  plasma membrane  plasma membrane  integral component of plasma membrane  phosphatidylethanolamine biosynthetic process  phosphatidylethanolamine biosynthetic process  phosphatidic acid biosynthetic process  phosphatidic acid biosynthetic process  phosphatidylglycerol biosynthetic process  phosphatidylcholine biosynthetic process  phosphatidylcholine biosynthetic process  phosphatidylserine biosynthetic process  phosphatidylserine biosynthetic process  phosphatidylinositol biosynthetic process  phosphatidylinositol biosynthetic process  response to cold  basal plasma membrane  positive regulation of triglyceride biosynthetic process  biotin transmembrane transporter activity  fatty acid transmembrane transporter activity  efflux transmembrane transporter activity  efflux transmembrane transporter activity  biotin transport  long-chain fatty acid transport  long-chain fatty acid transport  long-chain fatty acid transport  long-chain fatty acid import across plasma membrane  long-chain fatty acid import across plasma membrane  membrane  regulation of metabolic process  positive regulation of heat generation  very long-chain fatty acid-CoA ligase activity  cardiolipin biosynthetic process  cardiolipin biosynthetic process  response to insulin  adiponectin-activated signaling pathway  identical protein binding  glucose import in response to insulin stimulus  long-chain fatty acid import into cell  long-chain fatty acid import into cell  long-chain fatty acid import into cell  arachidonate-CoA ligase activity  negative regulation of phospholipid biosynthetic process  negative regulation of phospholipid biosynthetic process  positive regulation of protein serine/threonine kinase activity  oleoyl-CoA ligase activity  export across plasma membrane  export across plasma membrane  transport across blood-brain barrier  oleate transmembrane transporter activity  biotin import across plasma membrane  lipid transport across blood-brain barrier  
Pathways : KEGGKEGG_hsa03320 PPAR signaling pathway   
NDEx NetworkSLC27A1
Atlas of Cancer Signalling NetworkSLC27A1
Wikipedia pathwaysSLC27A1
Orthology - Evolution
OrthoDB376497
GeneTree (enSembl)ENSG00000130304
Phylogenetic Trees/Animal Genes : TreeFamSLC27A1
Homologs : HomoloGeneSLC27A1
Homology/Alignments : Family Browser (UCSC)SLC27A1
Gene fusions - Rearrangements
Fusion : QuiverSLC27A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC27A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC27A1
dbVarSLC27A1
ClinVarSLC27A1
MonarchSLC27A1
1000_GenomesSLC27A1 
Exome Variant ServerSLC27A1
GNOMAD BrowserENSG00000130304
Varsome BrowserSLC27A1
ACMGSLC27A1 variants
VarityQ6PCB7
Genomic Variants (DGV)SLC27A1 [DGVbeta]
DECIPHERSLC27A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC27A1 
Mutations
ICGC Data PortalSLC27A1 
TCGA Data PortalSLC27A1 
Broad Tumor PortalSLC27A1
OASIS PortalSLC27A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC27A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC27A1
Mutations and Diseases : HGMDSLC27A1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC27A1
DgiDB (Drug Gene Interaction Database)SLC27A1
DoCM (Curated mutations)SLC27A1
CIViC (Clinical Interpretations of Variants in Cancer)SLC27A1
Cancer3DSLC27A1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600691   
Orphanet
DisGeNETSLC27A1
MedgenSLC27A1
Genetic Testing Registry SLC27A1
NextProtQ6PCB7 [Medical]
GENETestsSLC27A1
Target ValidationSLC27A1
Huge Navigator SLC27A1 [HugePedia]
ClinGenSLC27A1
Clinical trials, drugs, therapy
MyCancerGenomeSLC27A1
Protein Interactions : CTDSLC27A1
Pharm GKB GenePA35869
PharosQ6PCB7
Clinical trialSLC27A1
Miscellaneous
canSAR (ICR)SLC27A1
HarmonizomeSLC27A1
ARCHS4SLC27A1
DataMed IndexSLC27A1
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC27A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:50:42 CET 2022

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