Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC27A3 (solute carrier family 27 member 3)

Identity

Alias_namessolute carrier family 27 (fatty acid transporter)
Alias_symbol (synonym)FATP3
MGC4365
ACSVL3
Other aliasVLCS-3
HGNC (Hugo) SLC27A3
LocusID (NCBI) 11000
Atlas_Id 51287
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153774354 and ends at 153780160 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INTS3 (1q21.3) / SLC27A3 (1q21.3)SLC27A3 (1q21.3) / SLC27A3 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC27A3   10997
Cards
Entrez_Gene (NCBI)SLC27A3  11000  solute carrier family 27 member 3
AliasesACSVL3; FATP3; VLCS-3
GeneCards (Weizmann)SLC27A3
Ensembl hg19 (Hinxton)ENSG00000143554 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143554 [Gene_View]  chr1:153774354-153780160 [Contig_View]  SLC27A3 [Vega]
ICGC DataPortalENSG00000143554
TCGA cBioPortalSLC27A3
AceView (NCBI)SLC27A3
Genatlas (Paris)SLC27A3
WikiGenes11000
SOURCE (Princeton)SLC27A3
Genetics Home Reference (NIH)SLC27A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC27A3  -     chr1:153774354-153780160 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC27A3  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblSLC27A3 - 1q21.3 [CytoView hg19]  SLC27A3 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISLC27A3 [Mapview hg19]  SLC27A3 [Mapview hg38]
OMIM604193   
Gene and transcription
Genbank (Entrez)AJ577572 AK027499 AK074134 AK075377 AK123997
RefSeq transcript (Entrez)NM_001317929 NM_024330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC27A3
Cluster EST : UnigeneHs.438723 [ NCBI ]
CGAP (NCI)Hs.438723
Alternative Splicing GalleryENSG00000143554
Gene ExpressionSLC27A3 [ NCBI-GEO ]   SLC27A3 [ EBI - ARRAY_EXPRESS ]   SLC27A3 [ SEEK ]   SLC27A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC27A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11000
GTEX Portal (Tissue expression)SLC27A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5K4L6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5K4L6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5K4L6
Splice isoforms : SwissVarQ5K4L6
Catalytic activity : Enzyme6.2.1.- [ Enzyme-Expasy ]   6.2.1.-6.2.1.- [ IntEnz-EBI ]   6.2.1.- [ BRENDA ]   6.2.1.- [ KEGG ]   
PhosPhoSitePlusQ5K4L6
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig    FATP3   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)SLC27A3
DMDM Disease mutations11000
Blocks (Seattle)SLC27A3
SuperfamilyQ5K4L6
Human Protein AtlasENSG00000143554
Peptide AtlasQ5K4L6
HPRD11967
IPIIPI00645636   IPI00922217   IPI00552985   IPI00645131   IPI00013623   IPI00983905   IPI00981817   
Protein Interaction databases
DIP (DOE-UCLA)Q5K4L6
IntAct (EBI)Q5K4L6
FunCoupENSG00000143554
BioGRIDSLC27A3
STRING (EMBL)SLC27A3
ZODIACSLC27A3
Ontologies - Pathways
QuickGOQ5K4L6
Ontology : AmiGOnucleotide binding  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  mitochondrial matrix  endoplasmic reticulum  membrane  integral component of membrane  very long-chain fatty acid-CoA ligase activity  mitochondrial membrane  long-chain fatty-acyl-CoA biosynthetic process  
Ontology : EGO-EBInucleotide binding  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  mitochondrial matrix  endoplasmic reticulum  membrane  integral component of membrane  very long-chain fatty acid-CoA ligase activity  mitochondrial membrane  long-chain fatty-acyl-CoA biosynthetic process  
NDEx NetworkSLC27A3
Atlas of Cancer Signalling NetworkSLC27A3
Wikipedia pathwaysSLC27A3
Orthology - Evolution
OrthoDB11000
GeneTree (enSembl)ENSG00000143554
Phylogenetic Trees/Animal Genes : TreeFamSLC27A3
HOVERGENQ5K4L6
HOGENOMQ5K4L6
Homologs : HomoloGeneSLC27A3
Homology/Alignments : Family Browser (UCSC)SLC27A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC27A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC27A3
dbVarSLC27A3
ClinVarSLC27A3
1000_GenomesSLC27A3 
Exome Variant ServerSLC27A3
ExAC (Exome Aggregation Consortium)SLC27A3 (select the gene name)
Genetic variants : HAPMAP11000
Genomic Variants (DGV)SLC27A3 [DGVbeta]
DECIPHERSLC27A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC27A3 
Mutations
ICGC Data PortalSLC27A3 
TCGA Data PortalSLC27A3 
Broad Tumor PortalSLC27A3
OASIS PortalSLC27A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC27A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC27A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC27A3
DgiDB (Drug Gene Interaction Database)SLC27A3
DoCM (Curated mutations)SLC27A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC27A3 (select a term)
intoGenSLC27A3
Cancer3DSLC27A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604193   
Orphanet
MedgenSLC27A3
Genetic Testing Registry SLC27A3
NextProtQ5K4L6 [Medical]
TSGene11000
GENETestsSLC27A3
Target ValidationSLC27A3
Huge Navigator SLC27A3 [HugePedia]
snp3D : Map Gene to Disease11000
BioCentury BCIQSLC27A3
ClinGenSLC27A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11000
Chemical/Pharm GKB GenePA35871
Clinical trialSLC27A3
Miscellaneous
canSAR (ICR)SLC27A3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC27A3
EVEXSLC27A3
GoPubMedSLC27A3
iHOPSLC27A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:45 CEST 2017

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