Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC27A4 (solute carrier family 27 member 4)

Identity

Alias_namessolute carrier family 27 (fatty acid transporter)
Alias_symbol (synonym)FATP4
ACSVL4
Other aliasIPS
HGNC (Hugo) SLC27A4
LocusID (NCBI) 10999
Atlas_Id 54633
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128340560 and ends at 128361470 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ODF2 (9q34.11) / SLC27A4 (9q34.11)SLC27A4 (9q34.11) / CDCA4 (14q32.33)SLC27A4 (9q34.11) / STXBP1 (9q34.11)
SSBP3 (1p32.3) / SLC27A4 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC27A4   10998
Cards
Entrez_Gene (NCBI)SLC27A4  10999  solute carrier family 27 member 4
AliasesACSVL4; FATP4; IPS
GeneCards (Weizmann)SLC27A4
Ensembl hg19 (Hinxton)ENSG00000167114 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167114 [Gene_View]  chr9:128340560-128361470 [Contig_View]  SLC27A4 [Vega]
ICGC DataPortalENSG00000167114
TCGA cBioPortalSLC27A4
AceView (NCBI)SLC27A4
Genatlas (Paris)SLC27A4
WikiGenes10999
SOURCE (Princeton)SLC27A4
Genetics Home Reference (NIH)SLC27A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC27A4  -     chr9:128340560-128361470 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC27A4  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblSLC27A4 - 9q34.11 [CytoView hg19]  SLC27A4 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBISLC27A4 [Mapview hg19]  SLC27A4 [Mapview hg38]
OMIM604194   608649   
Gene and transcription
Genbank (Entrez)AA350218 AF055899 AI478495 AK000722 AK027504
RefSeq transcript (Entrez)NM_005094
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC27A4
Cluster EST : UnigeneHs.656699 [ NCBI ]
CGAP (NCI)Hs.656699
Alternative Splicing GalleryENSG00000167114
Gene ExpressionSLC27A4 [ NCBI-GEO ]   SLC27A4 [ EBI - ARRAY_EXPRESS ]   SLC27A4 [ SEEK ]   SLC27A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC27A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10999
GTEX Portal (Tissue expression)SLC27A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1M0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1M0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1M0
Splice isoforms : SwissVarQ6P1M0
Catalytic activity : Enzyme6.2.1.- [ Enzyme-Expasy ]   6.2.1.-6.2.1.- [ IntEnz-EBI ]   6.2.1.- [ BRENDA ]   6.2.1.- [ KEGG ]   
PhosPhoSitePlusQ6P1M0
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig    FATP4    Lipocalin_CS   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)SLC27A4
DMDM Disease mutations10999
Blocks (Seattle)SLC27A4
SuperfamilyQ6P1M0
Human Protein AtlasENSG00000167114
Peptide AtlasQ6P1M0
HPRD09172
IPIIPI00412147   IPI00101335   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1M0
IntAct (EBI)Q6P1M0
FunCoupENSG00000167114
BioGRIDSLC27A4
STRING (EMBL)SLC27A4
ZODIACSLC27A4
Ontologies - Pathways
QuickGOQ6P1M0
Ontology : AmiGOnucleotide binding  medium-chain fatty acid transport  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  endoplasmic reticulum membrane  plasma membrane  microvillus  lipid metabolic process  transport  response to nutrient  fatty acid transporter activity  fatty acid transport  long-chain fatty acid transport  membrane  integral component of membrane  brush border membrane  very long-chain fatty acid-CoA ligase activity  very long-chain fatty acid catabolic process  skin development  long-chain fatty acid import  
Ontology : EGO-EBInucleotide binding  medium-chain fatty acid transport  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  endoplasmic reticulum membrane  plasma membrane  microvillus  lipid metabolic process  transport  response to nutrient  fatty acid transporter activity  fatty acid transport  long-chain fatty acid transport  membrane  integral component of membrane  brush border membrane  very long-chain fatty acid-CoA ligase activity  very long-chain fatty acid catabolic process  skin development  long-chain fatty acid import  
Pathways : KEGGPPAR signaling pathway    Fat digestion and absorption   
NDEx NetworkSLC27A4
Atlas of Cancer Signalling NetworkSLC27A4
Wikipedia pathwaysSLC27A4
Orthology - Evolution
OrthoDB10999
GeneTree (enSembl)ENSG00000167114
Phylogenetic Trees/Animal Genes : TreeFamSLC27A4
HOVERGENQ6P1M0
HOGENOMQ6P1M0
Homologs : HomoloGeneSLC27A4
Homology/Alignments : Family Browser (UCSC)SLC27A4
Gene fusions - Rearrangements
Fusion : MitelmanODF2/SLC27A4 [9q34.11/9q34.11]  [dup(9)(q34q34)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC27A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC27A4
dbVarSLC27A4
ClinVarSLC27A4
1000_GenomesSLC27A4 
Exome Variant ServerSLC27A4
ExAC (Exome Aggregation Consortium)SLC27A4 (select the gene name)
Genetic variants : HAPMAP10999
Genomic Variants (DGV)SLC27A4 [DGVbeta]
DECIPHERSLC27A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC27A4 
Mutations
ICGC Data PortalSLC27A4 
TCGA Data PortalSLC27A4 
Broad Tumor PortalSLC27A4
OASIS PortalSLC27A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC27A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC27A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC27A4
DgiDB (Drug Gene Interaction Database)SLC27A4
DoCM (Curated mutations)SLC27A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC27A4 (select a term)
intoGenSLC27A4
Cancer3DSLC27A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604194    608649   
Orphanet11808   
MedgenSLC27A4
Genetic Testing Registry SLC27A4
NextProtQ6P1M0 [Medical]
TSGene10999
GENETestsSLC27A4
Target ValidationSLC27A4
Huge Navigator SLC27A4 [HugePedia]
snp3D : Map Gene to Disease10999
BioCentury BCIQSLC27A4
ClinGenSLC27A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10999
Chemical/Pharm GKB GenePA35872
Clinical trialSLC27A4
Miscellaneous
canSAR (ICR)SLC27A4 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC27A4
EVEXSLC27A4
GoPubMedSLC27A4
iHOPSLC27A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:55:58 CEST 2017

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