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SLC27A5 (solute carrier family 27 member 5)

Identity

Alias_namessolute carrier family 27 (fatty acid transporter), member 5
Alias_symbol (synonym)FATP5
VLACSR
VLCS-H2
VLCSH2
FACVL3
FLJ22987
ACSVL6
ACSB
Other aliasBACS
BAL
FATP-5
HGNC (Hugo) SLC27A5
LocusID (NCBI) 10998
Atlas_Id 73380
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58498333 and ends at 58512065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC27A5 (19q13.43) / ESRRG (1q41)SNHG1 (11q12.3) / SLC27A5 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC27A5   10999
Cards
Entrez_Gene (NCBI)SLC27A5  10998  solute carrier family 27 member 5
AliasesACSB; ACSVL6; BACS; BAL; 
FACVL3; FATP-5; FATP5; VLACSR; VLCS-H2; VLCSH2
GeneCards (Weizmann)SLC27A5
Ensembl hg19 (Hinxton)ENSG00000083807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083807 [Gene_View]  chr19:58498333-58512065 [Contig_View]  SLC27A5 [Vega]
ICGC DataPortalENSG00000083807
TCGA cBioPortalSLC27A5
AceView (NCBI)SLC27A5
Genatlas (Paris)SLC27A5
WikiGenes10998
SOURCE (Princeton)SLC27A5
Genetics Home Reference (NIH)SLC27A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC27A5  -     chr19:58498333-58512065 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC27A5  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblSLC27A5 - 19q13.43 [CytoView hg19]  SLC27A5 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBISLC27A5 [Mapview hg19]  SLC27A5 [Mapview hg38]
OMIM603314   
Gene and transcription
Genbank (Entrez)AB208931 AF064255 AK026640 AK123036 AK298446
RefSeq transcript (Entrez)NM_001321196 NM_012254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC27A5
Cluster EST : UnigeneHs.292177 [ NCBI ]
CGAP (NCI)Hs.292177
Alternative Splicing GalleryENSG00000083807
Gene ExpressionSLC27A5 [ NCBI-GEO ]   SLC27A5 [ EBI - ARRAY_EXPRESS ]   SLC27A5 [ SEEK ]   SLC27A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC27A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10998
GTEX Portal (Tissue expression)SLC27A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2P5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2P5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2P5
Splice isoforms : SwissVarQ9Y2P5
Catalytic activity : Enzyme6.2.1.7 [ Enzyme-Expasy ]   6.2.1.76.2.1.7 [ IntEnz-EBI ]   6.2.1.7 [ BRENDA ]   6.2.1.7 [ KEGG ]   
PhosPhoSitePlusQ9Y2P5
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig    FATP5   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)SLC27A5
DMDM Disease mutations10998
Blocks (Seattle)SLC27A5
SuperfamilyQ9Y2P5
Human Protein AtlasENSG00000083807
Peptide AtlasQ9Y2P5
HPRD04499
IPIIPI00016827   IPI00909095   IPI00555721   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2P5
IntAct (EBI)Q9Y2P5
FunCoupENSG00000083807
BioGRIDSLC27A5
STRING (EMBL)SLC27A5
ZODIACSLC27A5
Ontologies - Pathways
QuickGOQ9Y2P5
Ontology : AmiGOvery long-chain fatty acid metabolic process  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  ATP binding  endoplasmic reticulum  endoplasmic reticulum membrane  triglyceride mobilization  bile acid biosynthetic process  bile acid biosynthetic process  basal plasma membrane  fatty acid transporter activity  bile acid and bile salt transport  plasma membrane long-chain fatty acid transport  integral component of endoplasmic reticulum membrane  very long-chain fatty acid-CoA ligase activity  protein complex binding  protein complex  ketone body biosynthetic process  cholate-CoA ligase activity  
Ontology : EGO-EBIvery long-chain fatty acid metabolic process  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  ATP binding  endoplasmic reticulum  endoplasmic reticulum membrane  triglyceride mobilization  bile acid biosynthetic process  bile acid biosynthetic process  basal plasma membrane  fatty acid transporter activity  bile acid and bile salt transport  plasma membrane long-chain fatty acid transport  integral component of endoplasmic reticulum membrane  very long-chain fatty acid-CoA ligase activity  protein complex binding  protein complex  ketone body biosynthetic process  cholate-CoA ligase activity  
Pathways : KEGGPrimary bile acid biosynthesis    PPAR signaling pathway    Bile secretion   
NDEx NetworkSLC27A5
Atlas of Cancer Signalling NetworkSLC27A5
Wikipedia pathwaysSLC27A5
Orthology - Evolution
OrthoDB10998
GeneTree (enSembl)ENSG00000083807
Phylogenetic Trees/Animal Genes : TreeFamSLC27A5
HOVERGENQ9Y2P5
HOGENOMQ9Y2P5
Homologs : HomoloGeneSLC27A5
Homology/Alignments : Family Browser (UCSC)SLC27A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC27A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC27A5
dbVarSLC27A5
ClinVarSLC27A5
1000_GenomesSLC27A5 
Exome Variant ServerSLC27A5
ExAC (Exome Aggregation Consortium)SLC27A5 (select the gene name)
Genetic variants : HAPMAP10998
Genomic Variants (DGV)SLC27A5 [DGVbeta]
DECIPHERSLC27A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC27A5 
Mutations
ICGC Data PortalSLC27A5 
TCGA Data PortalSLC27A5 
Broad Tumor PortalSLC27A5
OASIS PortalSLC27A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC27A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC27A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC27A5
DgiDB (Drug Gene Interaction Database)SLC27A5
DoCM (Curated mutations)SLC27A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC27A5 (select a term)
intoGenSLC27A5
Cancer3DSLC27A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603314   
Orphanet
MedgenSLC27A5
Genetic Testing Registry SLC27A5
NextProtQ9Y2P5 [Medical]
TSGene10998
GENETestsSLC27A5
Target ValidationSLC27A5
Huge Navigator SLC27A5 [HugePedia]
snp3D : Map Gene to Disease10998
BioCentury BCIQSLC27A5
ClinGenSLC27A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10998
Chemical/Pharm GKB GenePA35873
Clinical trialSLC27A5
Miscellaneous
canSAR (ICR)SLC27A5 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC27A5
EVEXSLC27A5
GoPubMedSLC27A5
iHOPSLC27A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:10 CEST 2017

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