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SLC27A6 (solute carrier family 27 member 6)

Identity

Alias_namesvery long-chain 2
Alias_symbol (synonym)FATP6
VLCS-H1
FACVL2
ACSVL2
Other alias
HGNC (Hugo) SLC27A6
LocusID (NCBI) 28965
Atlas_Id 54634
Location 5q23.3  [Link to chromosome band 5q23]
Location_base_pair Starts at 128965127 and ends at 129033642 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAMTS19 (5q23.3) / SLC27A6 (5q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC27A6   11000
Cards
Entrez_Gene (NCBI)SLC27A6  28965  solute carrier family 27 member 6
AliasesACSVL2; FACVL2; FATP6; VLCS-H1
GeneCards (Weizmann)SLC27A6
Ensembl hg19 (Hinxton)ENSG00000113396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113396 [Gene_View]  chr5:128965127-129033642 [Contig_View]  SLC27A6 [Vega]
ICGC DataPortalENSG00000113396
TCGA cBioPortalSLC27A6
AceView (NCBI)SLC27A6
Genatlas (Paris)SLC27A6
WikiGenes28965
SOURCE (Princeton)SLC27A6
Genetics Home Reference (NIH)SLC27A6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC27A6  -     chr5:128965127-129033642 +  5q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC27A6  -     5q23.3   [Description]    (hg19-Feb_2009)
EnsemblSLC27A6 - 5q23.3 [CytoView hg19]  SLC27A6 - 5q23.3 [CytoView hg38]
Mapping of homologs : NCBISLC27A6 [Mapview hg19]  SLC27A6 [Mapview hg38]
OMIM604196   
Gene and transcription
Genbank (Entrez)AA614135 AF064254 AK313456 AL833117 BC041945
RefSeq transcript (Entrez)NM_001017372 NM_001317984 NM_014031
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC27A6
Cluster EST : UnigeneHs.49765 [ NCBI ]
CGAP (NCI)Hs.49765
Alternative Splicing GalleryENSG00000113396
Gene ExpressionSLC27A6 [ NCBI-GEO ]   SLC27A6 [ EBI - ARRAY_EXPRESS ]   SLC27A6 [ SEEK ]   SLC27A6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC27A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28965
GTEX Portal (Tissue expression)SLC27A6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2P4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2P4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2P4
Splice isoforms : SwissVarQ9Y2P4
PhosPhoSitePlusQ9Y2P4
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig    FATP6   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)SLC27A6
DMDM Disease mutations28965
Blocks (Seattle)SLC27A6
SuperfamilyQ9Y2P4
Human Protein AtlasENSG00000113396
Peptide AtlasQ9Y2P4
HPRD09173
IPIIPI00470637   IPI00967464   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2P4
IntAct (EBI)Q9Y2P4
FunCoupENSG00000113396
BioGRIDSLC27A6
STRING (EMBL)SLC27A6
ZODIACSLC27A6
Ontologies - Pathways
QuickGOQ9Y2P4
Ontology : AmiGOvery long-chain fatty acid metabolic process  nucleotide binding  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  plasma membrane  fatty acid transporter activity  long-chain fatty acid transport  integral component of membrane  very long-chain fatty acid-CoA ligase activity  sarcolemma  
Ontology : EGO-EBIvery long-chain fatty acid metabolic process  nucleotide binding  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  plasma membrane  fatty acid transporter activity  long-chain fatty acid transport  integral component of membrane  very long-chain fatty acid-CoA ligase activity  sarcolemma  
Pathways : KEGGPPAR signaling pathway   
NDEx NetworkSLC27A6
Atlas of Cancer Signalling NetworkSLC27A6
Wikipedia pathwaysSLC27A6
Orthology - Evolution
OrthoDB28965
GeneTree (enSembl)ENSG00000113396
Phylogenetic Trees/Animal Genes : TreeFamSLC27A6
HOVERGENQ9Y2P4
HOGENOMQ9Y2P4
Homologs : HomoloGeneSLC27A6
Homology/Alignments : Family Browser (UCSC)SLC27A6
Gene fusions - Rearrangements
Fusion : MitelmanADAMTS19/SLC27A6 [5q23.3/5q23.3]  [t(5;5)(q23;q23)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC27A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC27A6
dbVarSLC27A6
ClinVarSLC27A6
1000_GenomesSLC27A6 
Exome Variant ServerSLC27A6
ExAC (Exome Aggregation Consortium)SLC27A6 (select the gene name)
Genetic variants : HAPMAP28965
Genomic Variants (DGV)SLC27A6 [DGVbeta]
DECIPHERSLC27A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC27A6 
Mutations
ICGC Data PortalSLC27A6 
TCGA Data PortalSLC27A6 
Broad Tumor PortalSLC27A6
OASIS PortalSLC27A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC27A6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC27A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC27A6
DgiDB (Drug Gene Interaction Database)SLC27A6
DoCM (Curated mutations)SLC27A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC27A6 (select a term)
intoGenSLC27A6
Cancer3DSLC27A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604196   
Orphanet
MedgenSLC27A6
Genetic Testing Registry SLC27A6
NextProtQ9Y2P4 [Medical]
TSGene28965
GENETestsSLC27A6
Target ValidationSLC27A6
Huge Navigator SLC27A6 [HugePedia]
snp3D : Map Gene to Disease28965
BioCentury BCIQSLC27A6
ClinGenSLC27A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28965
Chemical/Pharm GKB GenePA35874
Clinical trialSLC27A6
Miscellaneous
canSAR (ICR)SLC27A6 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC27A6
EVEXSLC27A6
GoPubMedSLC27A6
iHOPSLC27A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:55:58 CEST 2017

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