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SLC28A2 (solute carrier family 28 member 2)

Identity

Alias_namessolute carrier family 28 (sodium-coupled nucleoside transporter), member 2
solute carrier family 28 (concentrative nucleoside transporter), member 2
Alias_symbol (synonym)CNT2
SPNT1
HCNT2
HsT17153
Other alias
HGNC (Hugo) SLC28A2
LocusID (NCBI) 9153
Atlas_Id 73381
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45252230 and ends at 45275934 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC28A2   11002
Cards
Entrez_Gene (NCBI)SLC28A2  9153  solute carrier family 28 member 2
AliasesCNT2; HCNT2; HsT17153; SPNT1
GeneCards (Weizmann)SLC28A2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:45252230-45275934 [Contig_View]  SLC28A2 [Vega]
TCGA cBioPortalSLC28A2
AceView (NCBI)SLC28A2
Genatlas (Paris)SLC28A2
WikiGenes9153
SOURCE (Princeton)SLC28A2
Genetics Home Reference (NIH)SLC28A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC28A2  -     chr15:45252230-45275934 +  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC28A2  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblSLC28A2 - 15q21.1 [CytoView hg19]  SLC28A2 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBISLC28A2 [Mapview hg19]  SLC28A2 [Mapview hg38]
OMIM606208   
Gene and transcription
Genbank (Entrez)AF036109 AK025121 AK222709 AK291974 BC093737
RefSeq transcript (Entrez)NM_004212
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC28A2
Cluster EST : UnigeneHs.367833 [ NCBI ]
CGAP (NCI)Hs.367833
Gene ExpressionSLC28A2 [ NCBI-GEO ]   SLC28A2 [ EBI - ARRAY_EXPRESS ]   SLC28A2 [ SEEK ]   SLC28A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC28A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9153
GTEX Portal (Tissue expression)SLC28A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43868   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43868  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43868
Splice isoforms : SwissVarO43868
PhosPhoSitePlusO43868
Domains : Interpro (EBI)C_nuclsd_transpt    C_nuclsd_transpt_met_bac    CNT1/CNT2    CNT_C_dom    CNT_N_dom    Gate_dom   
Domain families : Pfam (Sanger)Gate (PF07670)    Nucleos_tra2_C (PF07662)    Nucleos_tra2_N (PF01773)   
Domain families : Pfam (NCBI)pfam07670    pfam07662    pfam01773   
Conserved Domain (NCBI)SLC28A2
DMDM Disease mutations9153
Blocks (Seattle)SLC28A2
SuperfamilyO43868
Peptide AtlasO43868
HPRD07069
IPIIPI00014561   
Protein Interaction databases
DIP (DOE-UCLA)O43868
IntAct (EBI)O43868
BioGRIDSLC28A2
STRING (EMBL)SLC28A2
ZODIACSLC28A2
Ontologies - Pathways
QuickGOO43868
Ontology : AmiGOnucleoside:sodium symporter activity  nucleoside:sodium symporter activity  plasma membrane  integral component of plasma membrane  nucleobase-containing compound metabolic process  purine nucleoside transmembrane transporter activity  purine nucleoside transmembrane transport  membrane  
Ontology : EGO-EBInucleoside:sodium symporter activity  nucleoside:sodium symporter activity  plasma membrane  integral component of plasma membrane  nucleobase-containing compound metabolic process  purine nucleoside transmembrane transporter activity  purine nucleoside transmembrane transport  membrane  
NDEx NetworkSLC28A2
Atlas of Cancer Signalling NetworkSLC28A2
Wikipedia pathwaysSLC28A2
Orthology - Evolution
OrthoDB9153
Phylogenetic Trees/Animal Genes : TreeFamSLC28A2
HOVERGENO43868
HOGENOMO43868
Homologs : HomoloGeneSLC28A2
Homology/Alignments : Family Browser (UCSC)SLC28A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC28A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC28A2
dbVarSLC28A2
ClinVarSLC28A2
1000_GenomesSLC28A2 
Exome Variant ServerSLC28A2
ExAC (Exome Aggregation Consortium)SLC28A2 (select the gene name)
Genetic variants : HAPMAP9153
Genomic Variants (DGV)SLC28A2 [DGVbeta]
DECIPHERSLC28A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC28A2 
Mutations
ICGC Data PortalSLC28A2 
TCGA Data PortalSLC28A2 
Broad Tumor PortalSLC28A2
OASIS PortalSLC28A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC28A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC28A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC28A2
DgiDB (Drug Gene Interaction Database)SLC28A2
DoCM (Curated mutations)SLC28A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC28A2 (select a term)
intoGenSLC28A2
Cancer3DSLC28A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606208   
Orphanet
MedgenSLC28A2
Genetic Testing Registry SLC28A2
NextProtO43868 [Medical]
TSGene9153
GENETestsSLC28A2
Target ValidationSLC28A2
Huge Navigator SLC28A2 [HugePedia]
snp3D : Map Gene to Disease9153
BioCentury BCIQSLC28A2
ClinGenSLC28A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9153
Chemical/Pharm GKB GenePA386
Clinical trialSLC28A2
Miscellaneous
canSAR (ICR)SLC28A2 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC28A2
EVEXSLC28A2
GoPubMedSLC28A2
iHOPSLC28A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:06 CEST 2017

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