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SLC28A3 (solute carrier family 28 member 3)

Identity

Alias_namessolute carrier family 28 (sodium-coupled nucleoside transporter), member 3
solute carrier family 28 (concentrative nucleoside transporter), member 3
Alias_symbol (synonym)CNT3
Other alias
HGNC (Hugo) SLC28A3
LocusID (NCBI) 64078
Atlas_Id 50956
Location 9q21.32  [Link to chromosome band 9q21]
Location_base_pair Starts at 84275850 and ends at 84340779 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MLLT3 (9p21.3) / SLC28A3 (9q21.32)SHB (9p13.2) / SLC28A3 (9q21.32)SLC28A3 (9q21.32) / SLC28A3 (9q21.32)
MLLT3 9p21.3 / SLC28A3 9q21.32SHB 9p13.2 / SLC28A3 9q21.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC28A3   16484
Cards
Entrez_Gene (NCBI)SLC28A3  64078  solute carrier family 28 member 3
AliasesCNT3
GeneCards (Weizmann)SLC28A3
Ensembl hg19 (Hinxton)ENSG00000197506 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197506 [Gene_View]  chr9:84275850-84340779 [Contig_View]  SLC28A3 [Vega]
ICGC DataPortalENSG00000197506
TCGA cBioPortalSLC28A3
AceView (NCBI)SLC28A3
Genatlas (Paris)SLC28A3
WikiGenes64078
SOURCE (Princeton)SLC28A3
Genetics Home Reference (NIH)SLC28A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC28A3  -     chr9:84275850-84340779 -  9q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC28A3  -     9q21.32   [Description]    (hg19-Feb_2009)
EnsemblSLC28A3 - 9q21.32 [CytoView hg19]  SLC28A3 - 9q21.32 [CytoView hg38]
Mapping of homologs : NCBISLC28A3 [Mapview hg19]  SLC28A3 [Mapview hg38]
OMIM608269   
Gene and transcription
Genbank (Entrez)AA643687 AF305210 AK022042 AK292849 AK304406
RefSeq transcript (Entrez)NM_001199633 NM_022127
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC28A3
Cluster EST : UnigeneHs.535966 [ NCBI ]
CGAP (NCI)Hs.535966
Alternative Splicing GalleryENSG00000197506
Gene ExpressionSLC28A3 [ NCBI-GEO ]   SLC28A3 [ EBI - ARRAY_EXPRESS ]   SLC28A3 [ SEEK ]   SLC28A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC28A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64078
GTEX Portal (Tissue expression)SLC28A3
Human Protein AtlasENSG00000197506-SLC28A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAS3
Splice isoforms : SwissVarQ9HAS3
PhosPhoSitePlusQ9HAS3
Domains : Interpro (EBI)C_nuclsd_transpt    C_nuclsd_transpt_met_bac    CNT3    CNT_C_dom    CNT_N_dom    Gate_dom   
Domain families : Pfam (Sanger)Gate (PF07670)    Nucleos_tra2_C (PF07662)    Nucleos_tra2_N (PF01773)   
Domain families : Pfam (NCBI)pfam07670    pfam07662    pfam01773   
Conserved Domain (NCBI)SLC28A3
DMDM Disease mutations64078
Blocks (Seattle)SLC28A3
SuperfamilyQ9HAS3
Human Protein Atlas [tissue]ENSG00000197506-SLC28A3 [tissue]
Peptide AtlasQ9HAS3
HPRD12200
IPIIPI00005485   IPI01014059   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAS3
IntAct (EBI)Q9HAS3
FunCoupENSG00000197506
BioGRIDSLC28A3
STRING (EMBL)SLC28A3
ZODIACSLC28A3
Ontologies - Pathways
QuickGOQ9HAS3
Ontology : AmiGOnucleoside:sodium symporter activity  endoplasmic reticulum membrane  plasma membrane  integral component of plasma membrane  pyrimidine- and adenine-specific:sodium symporter activity  purine-specific nucleoside:sodium symporter activity  pyrimidine nucleobase transport  purine nucleoside transmembrane transport  pyrimidine nucleoside transport  pyrimidine-containing compound transmembrane transport  purine nucleobase transmembrane transport  
Ontology : EGO-EBInucleoside:sodium symporter activity  endoplasmic reticulum membrane  plasma membrane  integral component of plasma membrane  pyrimidine- and adenine-specific:sodium symporter activity  purine-specific nucleoside:sodium symporter activity  pyrimidine nucleobase transport  purine nucleoside transmembrane transport  pyrimidine nucleoside transport  pyrimidine-containing compound transmembrane transport  purine nucleobase transmembrane transport  
NDEx NetworkSLC28A3
Atlas of Cancer Signalling NetworkSLC28A3
Wikipedia pathwaysSLC28A3
Orthology - Evolution
OrthoDB64078
GeneTree (enSembl)ENSG00000197506
Phylogenetic Trees/Animal Genes : TreeFamSLC28A3
HOVERGENQ9HAS3
HOGENOMQ9HAS3
Homologs : HomoloGeneSLC28A3
Homology/Alignments : Family Browser (UCSC)SLC28A3
Gene fusions - Rearrangements
Fusion : MitelmanMLLT3/SLC28A3 [9p21.3/9q21.32]  [t(9;9)(p21;q21)]  
Fusion : MitelmanSHB/SLC28A3 [9p13.2/9q21.32]  [t(9;9)(p13;q21)]  
Fusion: TCGA_MDACCMLLT3 9p21.3 SLC28A3 9q21.32 BRCA
Fusion: TCGA_MDACCSHB 9p13.2 SLC28A3 9q21.32 BRCA
Tumor Fusion PortalSLC28A3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC28A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC28A3
dbVarSLC28A3
ClinVarSLC28A3
1000_GenomesSLC28A3 
Exome Variant ServerSLC28A3
ExAC (Exome Aggregation Consortium)ENSG00000197506
GNOMAD BrowserENSG00000197506
Genetic variants : HAPMAP64078
Genomic Variants (DGV)SLC28A3 [DGVbeta]
DECIPHERSLC28A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC28A3 
Mutations
ICGC Data PortalSLC28A3 
TCGA Data PortalSLC28A3 
Broad Tumor PortalSLC28A3
OASIS PortalSLC28A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC28A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC28A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC28A3
DgiDB (Drug Gene Interaction Database)SLC28A3
DoCM (Curated mutations)SLC28A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC28A3 (select a term)
intoGenSLC28A3
Cancer3DSLC28A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608269   
Orphanet
DisGeNETSLC28A3
MedgenSLC28A3
Genetic Testing Registry SLC28A3
NextProtQ9HAS3 [Medical]
TSGene64078
GENETes|sSLC28A3
Target ValidationSLC28A3
Huge Navigator SLC28A3 [HugePedia]
snp3D : Map Gene to Disease64078
BioCentury BCIQSLC28A3
ClinGenSLC28A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64078
Chemical/Pharm GKB GenePA426
Clinical trialSLC28A3
Miscellaneous
canSAR (ICR)SLC28A3 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC28A3
EVEXSLC28A3
GoPubMedSLC28A3
iHOPSLC28A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:35:04 CET 2017

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