Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC29A1 (solute carrier family 29 (nucleoside transporters), member 1)

Identity

Other namesENT1
HGNC (Hugo) SLC29A1
LocusID (NCBI) 2030
Location 6p21.1
Location_base_pair Starts at 44187242 and ends at 44201888 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC29A1   11003
Entrez_Gene (NCBI)SLC29A1  2030  solute carrier family 29 (nucleoside transporters), member 1
Cards
GeneCards (Weizmann)SLC29A1
Ensembl (Hinxton)ENSG00000112759 [Gene_View]  chr6:44187242-44201888 [Contig_View]  SLC29A1 [Vega]
AceView (NCBI)SLC29A1
Genatlas (Paris)SLC29A1
SOURCE (Stanford)NM_001078174 NM_001078175 NM_001078176 NM_001078177 NM_004955
Genomic and cartography
GoldenPath (UCSC)SLC29A1  -  6p21.1   chr6:44187242-44201888 +  6p21.1   [Description]    (hg19-Feb_2009)
EnsemblSLC29A1 - 6p21.1 [CytoView]
Mapping of homologs : NCBISLC29A1 [Mapview]
OMIM602193   
Gene and transcription
Genbank (Entrez)AB490708 AB490709 AF079117 AK090491 AK090615
RefSeq transcript (SRS)NM_001078174 NM_001078175 NM_001078176 NM_001078177 NM_004955
RefSeq transcript (Entrez)NM_001078174 NM_001078175 NM_001078176 NM_001078177 NM_004955
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838981 NW_004078026
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838981 NW_004078026
Consensus coding sequences : CCDS (NCBI)SLC29A1
Cluster EST : UnigeneHs.25450 [ SRS ] Hs.25450 [ NCBI ]
CGAP (NCI)Hs.25450
Alternative Splicing : Fast-db (Paris)GSHG0025766
Alternative Splicing GalleryENSG00000112759
Gene ExpressionSLC29A1 [ NCBI-GEO ]   SLC29A1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99808 (SRS) Q99808 (Uniprot)
NextProtQ99808
With graphics : InterProQ99808
Splice isoforms : SwissVarQ99808(Swissvar)
Domains : Interpro (SRS)Eqnu_transpt   
Domains : Interpro (EBI)Eqnu_transpt   
Related proteins : CluSTrQ99808
Domain families : Pfam (SRS)Nucleoside_tran (PF01733)   
Domain families : Pfam (Sanger)Nucleoside_tran (PF01733)   
Domain families : Pfam (NCBI)pfam01733   
DMDM2030
Blocks (Seattle)Q99808
Human Protein AtlasENSG00000112759
HPRD03724
IPIIPI00939219   IPI00550382   IPI00922232   
Protein Interaction databases
DIP (DOE-UCLA)Q99808
IntAct (EBI)Q99808
FunCoupENSG00000112759
REACTOMESLC29A1
Protein Interaction Database2030
BioGRIDSLC29A1
InParanoidQ99808
Interologous Interaction database Q99808
IntegromeDBSLC29A1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC29A1
SNP (GeneSNP Utah)SLC29A1
SNP : HGBaseSLC29A1
Genetic variants : HAPMAPSLC29A1
Somatic Mutations in Cancer : COSMICSLC29A1 
CONAN: Copy Number AnalysisSLC29A1 
Mutations and Diseases : HGMDSLC29A1
OMIM602193   
GENETests602193   
Disease Genetic AssociationSLC29A1
Huge Navigator SLC29A1 [HugePedia]  SLC29A1 [HugeCancerGEM]
Genomic VariantsSLC29A1  SLC29A1 [DGVbeta]
ClinVarSLC29A1
snp3D : Map Gene to Disease2030
General knowledge
Homologs : HomoloGeneSLC29A1
Homology/Alignments : Family Browser (UCSC)SLC29A1
Phylogenetic Trees/Animal Genes : TreeFamSLC29A1
Chemical/Protein Interactions : CTD2030
Chemical/Pharm GKB GenePA154
Clinical trialSLC29A1
Cancer Resource (Charite)ENSG00000112759
Ontology : AmiGOnucleoside transmembrane transporter activity  plasma membrane  integral to plasma membrane  nucleobase-containing compound metabolic process  lactation  nucleoside transport  uridine transport  membrane  basolateral plasma membrane  apical plasma membrane  sleep  transmembrane transport  regulation of excitatory postsynaptic membrane potential  cellular response to glucose stimulus  cellular response to hypoxia  
Ontology : EGO-EBInucleoside transmembrane transporter activity  plasma membrane  integral to plasma membrane  nucleobase-containing compound metabolic process  lactation  nucleoside transport  uridine transport  membrane  basolateral plasma membrane  apical plasma membrane  sleep  transmembrane transport  regulation of excitatory postsynaptic membrane potential  cellular response to glucose stimulus  cellular response to hypoxia  
Other databases
Probes
Litterature
PubMed96 Pubmed reference(s) in Entrez
PubGeneSLC29A1
iHOPSLC29A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:49:52 CEST 2013
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