Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC29A3 (solute carrier family 29 member 3)

Identity

Alias_namessolute carrier family 29 (nucleoside transporters), member 3
solute carrier family 29 (equilibrative nucleoside transporter), member 3
Alias_symbol (synonym)ENT3
FLJ11160
Other aliasHCLAP
HJCD
PHID
HGNC (Hugo) SLC29A3
LocusID (NCBI) 55315
Atlas_Id 51657
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71319253 and ends at 71363390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ERBB2 (17q12) / SLC29A3 (10q22.1)SLC29A3 (10q22.1) / ATF7 (12q13.13)YWHAB (20q13.12) / SLC29A3 (10q22.1)
ERBB2 17q12 / SLC29A3 10q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC29A3   23096
Cards
Entrez_Gene (NCBI)SLC29A3  55315  solute carrier family 29 member 3
AliasesENT3; HCLAP; HJCD; PHID
GeneCards (Weizmann)SLC29A3
Ensembl hg19 (Hinxton)ENSG00000198246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198246 [Gene_View]  chr10:71319253-71363390 [Contig_View]  SLC29A3 [Vega]
ICGC DataPortalENSG00000198246
TCGA cBioPortalSLC29A3
AceView (NCBI)SLC29A3
Genatlas (Paris)SLC29A3
WikiGenes55315
SOURCE (Princeton)SLC29A3
Genetics Home Reference (NIH)SLC29A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC29A3  -     chr10:71319253-71363390 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC29A3  -     10q22.1   [Description]    (hg19-Feb_2009)
EnsemblSLC29A3 - 10q22.1 [CytoView hg19]  SLC29A3 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBISLC29A3 [Mapview hg19]  SLC29A3 [Mapview hg38]
OMIM602782   612373   
Gene and transcription
Genbank (Entrez)AF326987 AK002022 AK304503 AK314497 AK316152
RefSeq transcript (Entrez)NM_001174098 NM_018344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC29A3
Cluster EST : UnigeneHs.438419 [ NCBI ]
CGAP (NCI)Hs.438419
Alternative Splicing GalleryENSG00000198246
Gene ExpressionSLC29A3 [ NCBI-GEO ]   SLC29A3 [ EBI - ARRAY_EXPRESS ]   SLC29A3 [ SEEK ]   SLC29A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC29A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55315
GTEX Portal (Tissue expression)SLC29A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZD2
Splice isoforms : SwissVarQ9BZD2
PhosPhoSitePlusQ9BZD2
Domains : Interpro (EBI)ENT3    Eqnu_transpt   
Domain families : Pfam (Sanger)Nucleoside_tran (PF01733)   
Domain families : Pfam (NCBI)pfam01733   
Conserved Domain (NCBI)SLC29A3
DMDM Disease mutations55315
Blocks (Seattle)SLC29A3
SuperfamilyQ9BZD2
Human Protein AtlasENSG00000198246
Peptide AtlasQ9BZD2
HPRD11570
IPIIPI00412269   IPI00930378   IPI00956549   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZD2
IntAct (EBI)Q9BZD2
FunCoupENSG00000198246
BioGRIDSLC29A3
STRING (EMBL)SLC29A3
ZODIACSLC29A3
Ontologies - Pathways
QuickGOQ9BZD2
Ontology : AmiGOnucleoside transmembrane transporter activity  protein binding  lysosome  lysosomal membrane  lysosomal membrane  Golgi apparatus  integral component of membrane  late endosome membrane  intracellular membrane-bounded organelle  nucleoside transmembrane transport  
Ontology : EGO-EBInucleoside transmembrane transporter activity  protein binding  lysosome  lysosomal membrane  lysosomal membrane  Golgi apparatus  integral component of membrane  late endosome membrane  intracellular membrane-bounded organelle  nucleoside transmembrane transport  
NDEx NetworkSLC29A3
Atlas of Cancer Signalling NetworkSLC29A3
Wikipedia pathwaysSLC29A3
Orthology - Evolution
OrthoDB55315
GeneTree (enSembl)ENSG00000198246
Phylogenetic Trees/Animal Genes : TreeFamSLC29A3
HOVERGENQ9BZD2
HOGENOMQ9BZD2
Homologs : HomoloGeneSLC29A3
Homology/Alignments : Family Browser (UCSC)SLC29A3
Gene fusions - Rearrangements
Fusion : MitelmanERBB2/SLC29A3 [17q12/10q22.1]  [t(10;17)(q22;q12)]  
Fusion: TCGAERBB2 17q12 SLC29A3 10q22.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC29A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC29A3
dbVarSLC29A3
ClinVarSLC29A3
1000_GenomesSLC29A3 
Exome Variant ServerSLC29A3
ExAC (Exome Aggregation Consortium)SLC29A3 (select the gene name)
Genetic variants : HAPMAP55315
Genomic Variants (DGV)SLC29A3 [DGVbeta]
DECIPHERSLC29A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC29A3 
Mutations
ICGC Data PortalSLC29A3 
TCGA Data PortalSLC29A3 
Broad Tumor PortalSLC29A3
OASIS PortalSLC29A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC29A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC29A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC29A3
DgiDB (Drug Gene Interaction Database)SLC29A3
DoCM (Curated mutations)SLC29A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC29A3 (select a term)
intoGenSLC29A3
Cancer3DSLC29A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602782    612373   
Orphanet17774    1784   
MedgenSLC29A3
Genetic Testing Registry SLC29A3
NextProtQ9BZD2 [Medical]
TSGene55315
GENETestsSLC29A3
Target ValidationSLC29A3
Huge Navigator SLC29A3 [HugePedia]
snp3D : Map Gene to Disease55315
BioCentury BCIQSLC29A3
ClinGenSLC29A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55315
Chemical/Pharm GKB GenePA134950750
Clinical trialSLC29A3
Miscellaneous
canSAR (ICR)SLC29A3 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC29A3
EVEXSLC29A3
GoPubMedSLC29A3
iHOPSLC29A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:31:31 CEST 2017

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