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SLC29A4 (solute carrier family 29 member 4)

Identity

Alias_namessolute carrier family 29 (nucleoside transporters), member 4
solute carrier family 29 (equilibrative nucleoside transporter), member 4
Alias_symbol (synonym)FLJ34923
ENT4
Other aliasPMAT
HGNC (Hugo) SLC29A4
LocusID (NCBI) 222962
Atlas_Id 50322
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 5282930 and ends at 5304073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC29A4 (7p22.1) / CFL1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC29A4   23097
Cards
Entrez_Gene (NCBI)SLC29A4  222962  solute carrier family 29 member 4
AliasesENT4; PMAT
GeneCards (Weizmann)SLC29A4
Ensembl hg19 (Hinxton)ENSG00000164638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164638 [Gene_View]  chr7:5282930-5304073 [Contig_View]  SLC29A4 [Vega]
ICGC DataPortalENSG00000164638
TCGA cBioPortalSLC29A4
AceView (NCBI)SLC29A4
Genatlas (Paris)SLC29A4
WikiGenes222962
SOURCE (Princeton)SLC29A4
Genetics Home Reference (NIH)SLC29A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC29A4  -     chr7:5282930-5304073 +  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC29A4  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblSLC29A4 - 7p22.1 [CytoView hg19]  SLC29A4 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBISLC29A4 [Mapview hg19]  SLC29A4 [Mapview hg38]
OMIM609149   
Gene and transcription
Genbank (Entrez)AK075422 AK092242 AK296278 AL515106 AY485959
RefSeq transcript (Entrez)NM_001040661 NM_001300847 NM_153247
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC29A4
Cluster EST : UnigeneHs.4302 [ NCBI ]
CGAP (NCI)Hs.4302
Alternative Splicing GalleryENSG00000164638
Gene ExpressionSLC29A4 [ NCBI-GEO ]   SLC29A4 [ EBI - ARRAY_EXPRESS ]   SLC29A4 [ SEEK ]   SLC29A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC29A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222962
GTEX Portal (Tissue expression)SLC29A4
Human Protein AtlasENSG00000164638-SLC29A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTT9
Splice isoforms : SwissVarQ7RTT9
PhosPhoSitePlusQ7RTT9
Domains : Interpro (EBI)ENT4    Eqnu_transpt    MFS_dom   
Domain families : Pfam (Sanger)Nucleoside_tran (PF01733)   
Domain families : Pfam (NCBI)pfam01733   
Conserved Domain (NCBI)SLC29A4
DMDM Disease mutations222962
Blocks (Seattle)SLC29A4
SuperfamilyQ7RTT9
Human Protein Atlas [tissue]ENSG00000164638-SLC29A4 [tissue]
Peptide AtlasQ7RTT9
HPRD15362
IPIIPI00641511   IPI00888339   IPI00893610   IPI00884199   IPI00894015   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTT9
IntAct (EBI)Q7RTT9
FunCoupENSG00000164638
BioGRIDSLC29A4
STRING (EMBL)SLC29A4
ZODIACSLC29A4
Ontologies - Pathways
QuickGOQ7RTT9
Ontology : AmiGOnucleoside transmembrane transporter activity  plasma membrane  monoamine transmembrane transporter activity  monoamine transport  integral component of membrane  apical plasma membrane  nucleoside transmembrane transport  
Ontology : EGO-EBInucleoside transmembrane transporter activity  plasma membrane  monoamine transmembrane transporter activity  monoamine transport  integral component of membrane  apical plasma membrane  nucleoside transmembrane transport  
NDEx NetworkSLC29A4
Atlas of Cancer Signalling NetworkSLC29A4
Wikipedia pathwaysSLC29A4
Orthology - Evolution
OrthoDB222962
GeneTree (enSembl)ENSG00000164638
Phylogenetic Trees/Animal Genes : TreeFamSLC29A4
HOVERGENQ7RTT9
HOGENOMQ7RTT9
Homologs : HomoloGeneSLC29A4
Homology/Alignments : Family Browser (UCSC)SLC29A4
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC29A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC29A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC29A4
dbVarSLC29A4
ClinVarSLC29A4
1000_GenomesSLC29A4 
Exome Variant ServerSLC29A4
ExAC (Exome Aggregation Consortium)ENSG00000164638
GNOMAD BrowserENSG00000164638
Genetic variants : HAPMAP222962
Genomic Variants (DGV)SLC29A4 [DGVbeta]
DECIPHERSLC29A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC29A4 
Mutations
ICGC Data PortalSLC29A4 
TCGA Data PortalSLC29A4 
Broad Tumor PortalSLC29A4
OASIS PortalSLC29A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC29A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC29A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC29A4
DgiDB (Drug Gene Interaction Database)SLC29A4
DoCM (Curated mutations)SLC29A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC29A4 (select a term)
intoGenSLC29A4
Cancer3DSLC29A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609149   
Orphanet
MedgenSLC29A4
Genetic Testing Registry SLC29A4
NextProtQ7RTT9 [Medical]
TSGene222962
GENETestsSLC29A4
Target ValidationSLC29A4
Huge Navigator SLC29A4 [HugePedia]
snp3D : Map Gene to Disease222962
BioCentury BCIQSLC29A4
ClinGenSLC29A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222962
Chemical/Pharm GKB GenePA134976472
Clinical trialSLC29A4
Miscellaneous
canSAR (ICR)SLC29A4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC29A4
EVEXSLC29A4
GoPubMedSLC29A4
iHOPSLC29A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:11:17 CET 2017

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