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SLC2A10 (solute carrier family 2 member 10)

Identity

Alias_namessolute carrier family 2 (facilitated glucose transporter)
Alias_symbol (synonym)GLUT10
Other aliasATS
HGNC (Hugo) SLC2A10
LocusID (NCBI) 81031
Atlas_Id 54635
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 46709640 and ends at 46736346 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BROX (1q41) / SLC2A10 (20q13.12)EYA2 (20q13.12) / SLC2A10 (20q13.12)SLC2A10 (20q13.12) / MGAT1 (5q35.3)
SLC2A10 (20q13.12) / MSI2 (17q22)SLC2A10 (20q13.12) / ZMYND8 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A10   13444
Cards
Entrez_Gene (NCBI)SLC2A10  81031  solute carrier family 2 member 10
AliasesATS; GLUT10
GeneCards (Weizmann)SLC2A10
Ensembl hg19 (Hinxton)ENSG00000197496 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197496 [Gene_View]  chr20:46709640-46736346 [Contig_View]  SLC2A10 [Vega]
ICGC DataPortalENSG00000197496
TCGA cBioPortalSLC2A10
AceView (NCBI)SLC2A10
Genatlas (Paris)SLC2A10
WikiGenes81031
SOURCE (Princeton)SLC2A10
Genetics Home Reference (NIH)SLC2A10
Genomic and cartography
GoldenPath hg38 (UCSC)SLC2A10  -     chr20:46709640-46736346 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC2A10  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblSLC2A10 - 20q13.12 [CytoView hg19]  SLC2A10 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISLC2A10 [Mapview hg19]  SLC2A10 [Mapview hg38]
OMIM208050   606145   
Gene and transcription
Genbank (Entrez)AF248053 AF321240 AF479407 AK055548 AK290961
RefSeq transcript (Entrez)NM_030777
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC2A10
Cluster EST : UnigeneHs.305971 [ NCBI ]
CGAP (NCI)Hs.305971
Alternative Splicing GalleryENSG00000197496
Gene ExpressionSLC2A10 [ NCBI-GEO ]   SLC2A10 [ EBI - ARRAY_EXPRESS ]   SLC2A10 [ SEEK ]   SLC2A10 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC2A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81031
GTEX Portal (Tissue expression)SLC2A10
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95528   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95528  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95528
Splice isoforms : SwissVarO95528
PhosPhoSitePlusO95528
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like    Sugar/inositol_transpt    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC2A10
DMDM Disease mutations81031
Blocks (Seattle)SLC2A10
SuperfamilyO95528
Human Protein AtlasENSG00000197496
Peptide AtlasO95528
HPRD05851
IPIIPI00219424   
Protein Interaction databases
DIP (DOE-UCLA)O95528
IntAct (EBI)O95528
FunCoupENSG00000197496
BioGRIDSLC2A10
STRING (EMBL)SLC2A10
ZODIACSLC2A10
Ontologies - Pathways
QuickGOO95528
Ontology : AmiGOsugar:proton symporter activity  sugar:proton symporter activity  glucose transmembrane transporter activity  cytosol  plasma membrane  endomembrane system  glucose transport  proton transport  integral component of membrane  hexose transmembrane transport  glucose import  perinuclear region of cytoplasm  D-glucose transmembrane transporter activity  glucose transmembrane transport  
Ontology : EGO-EBIsugar:proton symporter activity  sugar:proton symporter activity  glucose transmembrane transporter activity  cytosol  plasma membrane  endomembrane system  glucose transport  proton transport  integral component of membrane  hexose transmembrane transport  glucose import  perinuclear region of cytoplasm  D-glucose transmembrane transporter activity  glucose transmembrane transport  
NDEx NetworkSLC2A10
Atlas of Cancer Signalling NetworkSLC2A10
Wikipedia pathwaysSLC2A10
Orthology - Evolution
OrthoDB81031
GeneTree (enSembl)ENSG00000197496
Phylogenetic Trees/Animal Genes : TreeFamSLC2A10
HOVERGENO95528
HOGENOMO95528
Homologs : HomoloGeneSLC2A10
Homology/Alignments : Family Browser (UCSC)SLC2A10
Gene fusions - Rearrangements
Fusion : MitelmanEYA2/SLC2A10 [20q13.12/20q13.12]  [dup(20)(q13q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC2A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A10
dbVarSLC2A10
ClinVarSLC2A10
1000_GenomesSLC2A10 
Exome Variant ServerSLC2A10
ExAC (Exome Aggregation Consortium)SLC2A10 (select the gene name)
Genetic variants : HAPMAP81031
Genomic Variants (DGV)SLC2A10 [DGVbeta]
DECIPHERSLC2A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC2A10 
Mutations
ICGC Data PortalSLC2A10 
TCGA Data PortalSLC2A10 
Broad Tumor PortalSLC2A10
OASIS PortalSLC2A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC2A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC2A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC2A10
DgiDB (Drug Gene Interaction Database)SLC2A10
DoCM (Curated mutations)SLC2A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A10 (select a term)
intoGenSLC2A10
Cancer3DSLC2A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM208050    606145   
Orphanet2965   
MedgenSLC2A10
Genetic Testing Registry SLC2A10
NextProtO95528 [Medical]
TSGene81031
GENETestsSLC2A10
Target ValidationSLC2A10
Huge Navigator SLC2A10 [HugePedia]
snp3D : Map Gene to Disease81031
BioCentury BCIQSLC2A10
ClinGenSLC2A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81031
Chemical/Pharm GKB GenePA37769
Clinical trialSLC2A10
Miscellaneous
canSAR (ICR)SLC2A10 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A10
EVEXSLC2A10
GoPubMedSLC2A10
iHOPSLC2A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:47 CEST 2017

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