Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC2A11 (solute carrier family 2 member 11)

Identity

Alias_namessolute carrier family 2 (facilitated glucose transporter)
Alias_symbol (synonym)GLUT11
GLUT10
Other alias
HGNC (Hugo) SLC2A11
LocusID (NCBI) 66035
Atlas_Id 52804
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 24198890 and ends at 24228299 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GSTT1 (22q11.23) / SLC2A11 (22q11.23)SLC2A11 (22q11.23) / ATN1 (12p13.31)SLC2A11 (22q11.23) / SNAP29 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A11   14239
Cards
Entrez_Gene (NCBI)SLC2A11  66035  solute carrier family 2 member 11
AliasesGLUT10; GLUT11
GeneCards (Weizmann)SLC2A11
Ensembl hg19 (Hinxton)ENSG00000133460 [Gene_View]  chr22:24198890-24228299 [Contig_View]  SLC2A11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133460 [Gene_View]  chr22:24198890-24228299 [Contig_View]  SLC2A11 [Vega]
ICGC DataPortalENSG00000133460
TCGA cBioPortalSLC2A11
AceView (NCBI)SLC2A11
Genatlas (Paris)SLC2A11
WikiGenes66035
SOURCE (Princeton)SLC2A11
Genetics Home Reference (NIH)SLC2A11
Genomic and cartography
GoldenPath hg19 (UCSC)SLC2A11  -     chr22:24198890-24228299 +  22q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC2A11  -     22q11.23   [Description]    (hg38-Dec_2013)
EnsemblSLC2A11 - 22q11.23 [CytoView hg19]  SLC2A11 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBISLC2A11 [Mapview hg19]  SLC2A11 [Mapview hg38]
OMIM610367   
Gene and transcription
Genbank (Entrez)AA888149 AB209301 AF443201 AF479409 AJ271290
RefSeq transcript (Entrez)NM_001024938 NM_001024939 NM_001282864 NM_030807
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NT_187633 NW_004929430
Consensus coding sequences : CCDS (NCBI)SLC2A11
Cluster EST : UnigeneHs.743282 [ NCBI ]
CGAP (NCI)Hs.743282
Alternative Splicing GalleryENSG00000133460
Gene ExpressionSLC2A11 [ NCBI-GEO ]   SLC2A11 [ EBI - ARRAY_EXPRESS ]   SLC2A11 [ SEEK ]   SLC2A11 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC2A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)66035
GTEX Portal (Tissue expression)SLC2A11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYW1
Splice isoforms : SwissVarQ9BYW1
PhosPhoSitePlusQ9BYW1
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_2 (PS00217)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport_like    Sugar/inositol_transpt    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC2A11
DMDM Disease mutations66035
Blocks (Seattle)SLC2A11
SuperfamilyQ9BYW1
Human Protein AtlasENSG00000133460
Peptide AtlasQ9BYW1
HPRD11571
IPIIPI00477596   IPI00607565   IPI00922661   IPI00903027   IPI00641781   IPI00903021   IPI00448931   IPI00292092   IPI00878436   IPI00878756   IPI00982338   IPI00878590   IPI00879788   IPI00879332   IPI00917221   IPI00916587   IPI00916336   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYW1
IntAct (EBI)Q9BYW1
FunCoupENSG00000133460
BioGRIDSLC2A11
STRING (EMBL)SLC2A11
ZODIACSLC2A11
Ontologies - Pathways
QuickGOQ9BYW1
Ontology : AmiGOnucleus  plasma membrane  integral component of membrane  cell junction  carbohydrate transmembrane transport  sugar transmembrane transporter activity  
Ontology : EGO-EBInucleus  plasma membrane  integral component of membrane  cell junction  carbohydrate transmembrane transport  sugar transmembrane transporter activity  
NDEx NetworkSLC2A11
Atlas of Cancer Signalling NetworkSLC2A11
Wikipedia pathwaysSLC2A11
Orthology - Evolution
OrthoDB66035
GeneTree (enSembl)ENSG00000133460
Phylogenetic Trees/Animal Genes : TreeFamSLC2A11
HOVERGENQ9BYW1
HOGENOMQ9BYW1
Homologs : HomoloGeneSLC2A11
Homology/Alignments : Family Browser (UCSC)SLC2A11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC2A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A11
dbVarSLC2A11
ClinVarSLC2A11
1000_GenomesSLC2A11 
Exome Variant ServerSLC2A11
ExAC (Exome Aggregation Consortium)SLC2A11 (select the gene name)
Genetic variants : HAPMAP66035
Genomic Variants (DGV)SLC2A11 [DGVbeta]
DECIPHER (Syndromes)22:24198890-24228299  ENSG00000133460
CONAN: Copy Number AnalysisSLC2A11 
Mutations
ICGC Data PortalSLC2A11 
TCGA Data PortalSLC2A11 
Broad Tumor PortalSLC2A11
OASIS PortalSLC2A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC2A11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC2A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC2A11
DgiDB (Drug Gene Interaction Database)SLC2A11
DoCM (Curated mutations)SLC2A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A11 (select a term)
intoGenSLC2A11
Cancer3DSLC2A11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610367   
Orphanet
MedgenSLC2A11
Genetic Testing Registry SLC2A11
NextProtQ9BYW1 [Medical]
TSGene66035
GENETestsSLC2A11
Huge Navigator SLC2A11 [HugePedia]
snp3D : Map Gene to Disease66035
BioCentury BCIQSLC2A11
ClinGenSLC2A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD66035
Chemical/Pharm GKB GenePA37861
Clinical trialSLC2A11
Miscellaneous
canSAR (ICR)SLC2A11 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A11
EVEXSLC2A11
GoPubMedSLC2A11
iHOPSLC2A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:44 CET 2017

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