Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC2A13 (solute carrier family 2 member 13)

Identity

Alias_namessolute carrier family 2 (facilitated glucose transporter)
Alias_symbol (synonym)HMIT
Other alias
HGNC (Hugo) SLC2A13
LocusID (NCBI) 114134
Atlas_Id 51443
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 39755021 and ends at 40105859 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GRB10 (7p12.1) / SLC2A13 (12q12)KIF21A (12q12) / SLC2A13 (12q12)SLC2A13 (12q12) / ANAPC7 (12q24.11)
SLC2A13 (12q12) / PRKAG2 (7q36.1)SLC2A13 (12q12) / RAB3IP (12q15)SLC2A13 (12q12) / RP11-478C19.2 ()
SLC2A13 (12q12) / TERT (5p15.33)SLC2A13 (12q12) / ZNF329 (19q13.43)GRB10 7p12.1 / SLC2A13 12q12
KIF21A 12q12 / SLC2A13 12q12SLC2A13 12q12 / RAB3IP 12q15SLC2A13 12q12 RP11-478C19.2
SLC2A13 12q12 / TERT 5p15.33SLC2A13 12q12 / ZNF329 19q13.43

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A13   15956
Cards
Entrez_Gene (NCBI)SLC2A13  114134  solute carrier family 2 member 13
AliasesHMIT
GeneCards (Weizmann)SLC2A13
Ensembl hg19 (Hinxton)ENSG00000151229 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151229 [Gene_View]  chr12:39755021-40105859 [Contig_View]  SLC2A13 [Vega]
ICGC DataPortalENSG00000151229
TCGA cBioPortalSLC2A13
AceView (NCBI)SLC2A13
Genatlas (Paris)SLC2A13
WikiGenes114134
SOURCE (Princeton)SLC2A13
Genetics Home Reference (NIH)SLC2A13
Genomic and cartography
GoldenPath hg38 (UCSC)SLC2A13  -     chr12:39755021-40105859 -  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC2A13  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblSLC2A13 - 12q12 [CytoView hg19]  SLC2A13 - 12q12 [CytoView hg38]
Mapping of homologs : NCBISLC2A13 [Mapview hg19]  SLC2A13 [Mapview hg38]
OMIM611036   
Gene and transcription
Genbank (Entrez)AJ315644 AK000182 AK026495 BC039431 BC047507
RefSeq transcript (Entrez)NM_052885
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC2A13
Cluster EST : UnigeneHs.558595 [ NCBI ]
CGAP (NCI)Hs.558595
Alternative Splicing GalleryENSG00000151229
Gene ExpressionSLC2A13 [ NCBI-GEO ]   SLC2A13 [ EBI - ARRAY_EXPRESS ]   SLC2A13 [ SEEK ]   SLC2A13 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC2A13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114134
GTEX Portal (Tissue expression)SLC2A13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QE2
Splice isoforms : SwissVarQ96QE2
PhosPhoSitePlusQ96QE2
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)    SUGAR_TRANSPORT_2 (PS00217)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like    Sugar/inositol_transpt    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC2A13
DMDM Disease mutations114134
Blocks (Seattle)SLC2A13
SuperfamilyQ96QE2
Human Protein AtlasENSG00000151229
Peptide AtlasQ96QE2
HPRD15363
IPIIPI00658045   IPI00939211   
Protein Interaction databases
DIP (DOE-UCLA)Q96QE2
IntAct (EBI)Q96QE2
FunCoupENSG00000151229
BioGRIDSLC2A13
STRING (EMBL)SLC2A13
ZODIACSLC2A13
Ontologies - Pathways
QuickGOQ96QE2
Ontology : AmiGOsugar:proton symporter activity  glucose transmembrane transporter activity  myo-inositol:proton symporter activity  plasma membrane  myo-inositol transport  proton transport  integral component of membrane  hexose transmembrane transport  glucose import  glucose transmembrane transport  
Ontology : EGO-EBIsugar:proton symporter activity  glucose transmembrane transporter activity  myo-inositol:proton symporter activity  plasma membrane  myo-inositol transport  proton transport  integral component of membrane  hexose transmembrane transport  glucose import  glucose transmembrane transport  
NDEx NetworkSLC2A13
Atlas of Cancer Signalling NetworkSLC2A13
Wikipedia pathwaysSLC2A13
Orthology - Evolution
OrthoDB114134
GeneTree (enSembl)ENSG00000151229
Phylogenetic Trees/Animal Genes : TreeFamSLC2A13
HOVERGENQ96QE2
HOGENOMQ96QE2
Homologs : HomoloGeneSLC2A13
Homology/Alignments : Family Browser (UCSC)SLC2A13
Gene fusions - Rearrangements
Fusion : MitelmanGRB10/SLC2A13 [7p12.1/12q12]  [t(7;12)(p12;q12)]  
Fusion : MitelmanSLC2A13/ANAPC7 [12q12/12q24.11]  [t(12;12)(q12;q24)]  
Fusion : MitelmanSLC2A13/TERT [12q12/5p15.33]  [t(5;12)(p15;q12)]  
Fusion : MitelmanSLC2A13/ZNF329 [12q12/19q13.43]  [t(12;19)(q12;q13)]  
Fusion: TCGAGRB10 7p12.1 SLC2A13 12q12 BRCA
Fusion: TCGAKIF21A 12q12 SLC2A13 12q12 LUAD
Fusion: TCGASLC2A13 12q12 RAB3IP 12q15 LUAD
Fusion: TCGASLC2A13 12q12 RP11-478C19.2 GBM
Fusion: TCGASLC2A13 12q12 TERT 5p15.33 KIRC
Fusion: TCGASLC2A13 12q12 ZNF329 19q13.43 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC2A13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A13
dbVarSLC2A13
ClinVarSLC2A13
1000_GenomesSLC2A13 
Exome Variant ServerSLC2A13
ExAC (Exome Aggregation Consortium)SLC2A13 (select the gene name)
Genetic variants : HAPMAP114134
Genomic Variants (DGV)SLC2A13 [DGVbeta]
DECIPHERSLC2A13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC2A13 
Mutations
ICGC Data PortalSLC2A13 
TCGA Data PortalSLC2A13 
Broad Tumor PortalSLC2A13
OASIS PortalSLC2A13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC2A13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC2A13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC2A13
DgiDB (Drug Gene Interaction Database)SLC2A13
DoCM (Curated mutations)SLC2A13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A13 (select a term)
intoGenSLC2A13
Cancer3DSLC2A13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611036   
Orphanet
MedgenSLC2A13
Genetic Testing Registry SLC2A13
NextProtQ96QE2 [Medical]
TSGene114134
GENETestsSLC2A13
Target ValidationSLC2A13
Huge Navigator SLC2A13 [HugePedia]
snp3D : Map Gene to Disease114134
BioCentury BCIQSLC2A13
ClinGenSLC2A13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114134
Chemical/Pharm GKB GenePA38066
Clinical trialSLC2A13
Miscellaneous
canSAR (ICR)SLC2A13 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A13
EVEXSLC2A13
GoPubMedSLC2A13
iHOPSLC2A13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:47 CEST 2017

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