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SLC2A2 (solute carrier family 2 (facilitated glucose transporter), member 2)

Identity

Other namesGLUT2
HGNC (Hugo) SLC2A2
LocusID (NCBI) 6514
Atlas_Id 51069
Location 3q26.2
Location_base_pair Starts at 170714137 and ends at 170744768 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A2   11006
Cards
Entrez_Gene (NCBI)SLC2A2  6514  solute carrier family 2 (facilitated glucose transporter), member 2
GeneCards (Weizmann)SLC2A2
Ensembl hg19 (Hinxton)ENSG00000163581 [Gene_View]  chr3:170714137-170744768 [Contig_View]  SLC2A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163581 [Gene_View]  chr3:170714137-170744768 [Contig_View]  SLC2A2 [Vega]
ICGC DataPortalENSG00000163581
TCGA cBioPortalSLC2A2
AceView (NCBI)SLC2A2
Genatlas (Paris)SLC2A2
WikiGenes6514
SOURCE (Princeton)SLC2A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC2A2  -     chr3:170714137-170744768 -  3q26.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC2A2  -     3q26.2   [Description]    (hg38-Dec_2013)
EnsemblSLC2A2 - 3q26.2 [CytoView hg19]  SLC2A2 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBISLC2A2 [Mapview hg19]  SLC2A2 [Mapview hg38]
OMIM125853   138160   227810   
Gene and transcription
Genbank (Entrez)AK290846 AK292741 AK298418 AK313622 BC060041
RefSeq transcript (Entrez)NM_000340 NM_001278658 NM_001278659
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_008108 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)SLC2A2
Cluster EST : UnigeneHs.167584 [ NCBI ]
CGAP (NCI)Hs.167584
Alternative Splicing : Fast-db (Paris)GSHG0022231
Alternative Splicing GalleryENSG00000163581
Gene ExpressionSLC2A2 [ NCBI-GEO ]     SLC2A2 [ SEEK ]   SLC2A2 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6514
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11168 (Uniprot)
NextProtP11168  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11168
Splice isoforms : SwissVarP11168 (Swissvar)
PhosPhoSitePlusP11168
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)    SUGAR_TRANSPORT_2 (PS00217)   
Domains : Interpro (EBI)Glc_transpt_2    MFS_dom    Sub_transporter    Sugar/inositol_transpt    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
DMDM Disease mutations6514
Blocks (Seattle)SLC2A2
Human Protein AtlasENSG00000163581
Peptide AtlasP11168
HPRD00685
IPIIPI00003905   IPI00744509   IPI00946364   IPI00947212   
Protein Interaction databases
DIP (DOE-UCLA)P11168
IntAct (EBI)P11168
FunCoupENSG00000163581
BioGRIDSLC2A2
IntegromeDBSLC2A2
STRING (EMBL)SLC2A2
ZODIACSLC2A2
Ontologies - Pathways
QuickGOP11168
Ontology : AmiGOinsulin receptor binding  glucose transmembrane transporter activity  endosome  cytosol  plasma membrane  integral component of plasma membrane  cell-cell junction  carbohydrate metabolic process  energy reserve metabolic process  hexose transport  response to glucose  carbohydrate utilization  hexose transmembrane transporter activity  fructose transport  glucose transport  membrane  basolateral plasma membrane  endocrine pancreas development  brush border membrane  dehydroascorbic acid transporter activity  hexose transmembrane transport  response to peptide hormone  small molecule metabolic process  regulation of insulin secretion  D-glucose transmembrane transporter activity  transmembrane transport  dehydroascorbic acid transport  glucose transmembrane transport  glucose transmembrane transport  glucose transmembrane transport  
Ontology : EGO-EBIinsulin receptor binding  glucose transmembrane transporter activity  endosome  cytosol  plasma membrane  integral component of plasma membrane  cell-cell junction  carbohydrate metabolic process  energy reserve metabolic process  hexose transport  response to glucose  carbohydrate utilization  hexose transmembrane transporter activity  fructose transport  glucose transport  membrane  basolateral plasma membrane  endocrine pancreas development  brush border membrane  dehydroascorbic acid transporter activity  hexose transmembrane transport  response to peptide hormone  small molecule metabolic process  regulation of insulin secretion  D-glucose transmembrane transporter activity  transmembrane transport  dehydroascorbic acid transport  glucose transmembrane transport  glucose transmembrane transport  glucose transmembrane transport  
Pathways : KEGGInsulin secretion    Prolactin signaling pathway    Type II diabetes mellitus    Maturity onset diabetes of the young    Carbohydrate digestion and absorption   
Protein Interaction DatabaseSLC2A2
Atlas of Cancer Signalling NetworkSLC2A2
Wikipedia pathwaysSLC2A2
Orthology - Evolution
OrthoDB6514
GeneTree (enSembl)ENSG00000163581
Phylogenetic Trees/Animal Genes : TreeFamSLC2A2
Homologs : HomoloGeneSLC2A2
Homology/Alignments : Family Browser (UCSC)SLC2A2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC2A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A2
dbVarSLC2A2
ClinVarSLC2A2
1000_GenomesSLC2A2 
Exome Variant ServerSLC2A2
Exome Aggregation Consortium (ExAC)ENSG00000163581
SNP (GeneSNP Utah)SLC2A2
SNP : HGBaseSLC2A2
Genetic variants : HAPMAPSLC2A2
Genomic Variants (DGV)SLC2A2 [DGVbeta]
Mutations
ICGC Data PortalSLC2A2 
TCGA Data PortalSLC2A2 
Tumor PortalSLC2A2
TCGA Copy Number PortalSLC2A2
Somatic Mutations in Cancer : COSMICSLC2A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC2A2
DgiDB (Drug Gene Interaction Database)SLC2A2
DoCM (Curated mutations)SLC2A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A2 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:170714137-170744768
CONAN: Copy Number AnalysisSLC2A2 
Mutations and Diseases : HGMDSLC2A2
OMIM125853    138160    227810   
MedgenSLC2A2
NextProtP11168 [Medical]
TSGene6514
GENETestsSLC2A2
Huge Navigator SLC2A2 [HugePedia]  SLC2A2 [HugeCancerGEM]
snp3D : Map Gene to Disease6514
BioCentury BCIQSLC2A2
General knowledge
Chemical/Protein Interactions : CTD6514
Chemical/Pharm GKB GenePA35876
Clinical trialSLC2A2
Other databases
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A2
GoPubMedSLC2A2
iHOPSLC2A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:30:34 CET 2016

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