Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC2A2 (solute carrier family 2 member 2)

Identity

Alias_namesGLUT2
solute carrier family 2 (facilitated glucose transporter)
Other alias
HGNC (Hugo) SLC2A2
LocusID (NCBI) 6514
Atlas_Id 51069
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 170996348 and ends at 171026979 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A2   11006
Cards
Entrez_Gene (NCBI)SLC2A2  6514  solute carrier family 2 member 2
AliasesGLUT2
GeneCards (Weizmann)SLC2A2
Ensembl hg19 (Hinxton)ENSG00000163581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163581 [Gene_View]  chr3:170996348-171026979 [Contig_View]  SLC2A2 [Vega]
ICGC DataPortalENSG00000163581
TCGA cBioPortalSLC2A2
AceView (NCBI)SLC2A2
Genatlas (Paris)SLC2A2
WikiGenes6514
SOURCE (Princeton)SLC2A2
Genetics Home Reference (NIH)SLC2A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC2A2  -     chr3:170996348-171026979 -  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC2A2  -     3q26.2   [Description]    (hg19-Feb_2009)
EnsemblSLC2A2 - 3q26.2 [CytoView hg19]  SLC2A2 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBISLC2A2 [Mapview hg19]  SLC2A2 [Mapview hg38]
OMIM125853   138160   227810   
Gene and transcription
Genbank (Entrez)AK290846 AK292741 AK298418 AK313622 BC060041
RefSeq transcript (Entrez)NM_000340 NM_001278658 NM_001278659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC2A2
Cluster EST : UnigeneHs.167584 [ NCBI ]
CGAP (NCI)Hs.167584
Alternative Splicing GalleryENSG00000163581
Gene ExpressionSLC2A2 [ NCBI-GEO ]   SLC2A2 [ EBI - ARRAY_EXPRESS ]   SLC2A2 [ SEEK ]   SLC2A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC2A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6514
GTEX Portal (Tissue expression)SLC2A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11168   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11168  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11168
Splice isoforms : SwissVarP11168
PhosPhoSitePlusP11168
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)    SUGAR_TRANSPORT_2 (PS00217)   
Domains : Interpro (EBI)Glc_transpt_2    MFS_dom    MFS_sugar_transport-like    Sugar/inositol_transpt    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC2A2
DMDM Disease mutations6514
Blocks (Seattle)SLC2A2
SuperfamilyP11168
Human Protein AtlasENSG00000163581
Peptide AtlasP11168
HPRD00685
IPIIPI00003905   IPI00744509   IPI00946364   IPI00947212   
Protein Interaction databases
DIP (DOE-UCLA)P11168
IntAct (EBI)P11168
FunCoupENSG00000163581
BioGRIDSLC2A2
STRING (EMBL)SLC2A2
ZODIACSLC2A2
Ontologies - Pathways
QuickGOP11168
Ontology : AmiGOglucose transmembrane transporter activity  cytoplasm  plasma membrane  integral component of plasma membrane  brush border  cell-cell junction  carbohydrate metabolic process  hexose transport  hexose transmembrane transporter activity  glucose transport  membrane  apical plasma membrane  dehydroascorbic acid transporter activity  regulation of insulin secretion  D-glucose transmembrane transporter activity  dehydroascorbic acid transport  glucose transmembrane transport  
Ontology : EGO-EBIglucose transmembrane transporter activity  cytoplasm  plasma membrane  integral component of plasma membrane  brush border  cell-cell junction  carbohydrate metabolic process  hexose transport  hexose transmembrane transporter activity  glucose transport  membrane  apical plasma membrane  dehydroascorbic acid transporter activity  regulation of insulin secretion  D-glucose transmembrane transporter activity  dehydroascorbic acid transport  glucose transmembrane transport  
Pathways : KEGGInsulin secretion    Prolactin signaling pathway    Type II diabetes mellitus    Maturity onset diabetes of the young    Carbohydrate digestion and absorption   
NDEx NetworkSLC2A2
Atlas of Cancer Signalling NetworkSLC2A2
Wikipedia pathwaysSLC2A2
Orthology - Evolution
OrthoDB6514
GeneTree (enSembl)ENSG00000163581
Phylogenetic Trees/Animal Genes : TreeFamSLC2A2
HOVERGENP11168
HOGENOMP11168
Homologs : HomoloGeneSLC2A2
Homology/Alignments : Family Browser (UCSC)SLC2A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC2A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A2
dbVarSLC2A2
ClinVarSLC2A2
1000_GenomesSLC2A2 
Exome Variant ServerSLC2A2
ExAC (Exome Aggregation Consortium)SLC2A2 (select the gene name)
Genetic variants : HAPMAP6514
Genomic Variants (DGV)SLC2A2 [DGVbeta]
DECIPHERSLC2A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC2A2 
Mutations
ICGC Data PortalSLC2A2 
TCGA Data PortalSLC2A2 
Broad Tumor PortalSLC2A2
OASIS PortalSLC2A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC2A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC2A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC2A2
DgiDB (Drug Gene Interaction Database)SLC2A2
DoCM (Curated mutations)SLC2A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A2 (select a term)
intoGenSLC2A2
Cancer3DSLC2A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM125853    138160    227810   
Orphanet3513   
MedgenSLC2A2
Genetic Testing Registry SLC2A2
NextProtP11168 [Medical]
TSGene6514
GENETestsSLC2A2
Huge Navigator SLC2A2 [HugePedia]
snp3D : Map Gene to Disease6514
BioCentury BCIQSLC2A2
ClinGenSLC2A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6514
Chemical/Pharm GKB GenePA35876
Clinical trialSLC2A2
Miscellaneous
canSAR (ICR)SLC2A2 (select the gene name)
Probes
Litterature
PubMed84 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A2
EVEXSLC2A2
GoPubMedSLC2A2
iHOPSLC2A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:37:39 CEST 2017

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