Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC2A4RG (SLC2A4 regulator)

Identity

Alias_symbol (synonym)GEF
HDBP1
Si-1-2
Si-1-2-19
Other aliasHDBP-1
HGNC (Hugo) SLC2A4RG
LocusID (NCBI) 56731
Atlas_Id 73384
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63739858 and ends at 63744050 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BRK1 (3p25.3) / SLC2A4RG (20q13.33)SLC2A4RG (20q13.33) / MOK (14q32.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A4RG   15930
Cards
Entrez_Gene (NCBI)SLC2A4RG  56731  SLC2A4 regulator
AliasesGEF; HDBP-1; HDBP1; Si-1-2; 
Si-1-2-19
GeneCards (Weizmann)SLC2A4RG
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:63739858-63744050 [Contig_View]  SLC2A4RG [Vega]
TCGA cBioPortalSLC2A4RG
AceView (NCBI)SLC2A4RG
Genatlas (Paris)SLC2A4RG
WikiGenes56731
SOURCE (Princeton)SLC2A4RG
Genetics Home Reference (NIH)SLC2A4RG
Genomic and cartography
GoldenPath hg38 (UCSC)SLC2A4RG  -     chr20:63739858-63744050 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC2A4RG  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblSLC2A4RG - 20q13.33 [CytoView hg19]  SLC2A4RG - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBISLC2A4RG [Mapview hg19]  SLC2A4RG [Mapview hg38]
OMIM609493   
Gene and transcription
Genbank (Entrez)AB044777 AB044786 AB052777 AF249267 AK298304
RefSeq transcript (Entrez)NM_020062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC2A4RG
Cluster EST : UnigeneHs.435126 [ NCBI ]
CGAP (NCI)Hs.435126
Gene ExpressionSLC2A4RG [ NCBI-GEO ]   SLC2A4RG [ EBI - ARRAY_EXPRESS ]   SLC2A4RG [ SEEK ]   SLC2A4RG [ MEM ]
Gene Expression Viewer (FireBrowse)SLC2A4RG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56731
GTEX Portal (Tissue expression)SLC2A4RG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR83
Splice isoforms : SwissVarQ9NR83
PhosPhoSitePlusQ9NR83
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SLC2A4RG
DMDM Disease mutations56731
Blocks (Seattle)SLC2A4RG
SuperfamilyQ9NR83
Peptide AtlasQ9NR83
HPRD15364
IPIIPI00307619   IPI00221366   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR83
IntAct (EBI)Q9NR83
BioGRIDSLC2A4RG
STRING (EMBL)SLC2A4RG
ZODIACSLC2A4RG
Ontologies - Pathways
QuickGOQ9NR83
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear speck  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear speck  metal ion binding  
NDEx NetworkSLC2A4RG
Atlas of Cancer Signalling NetworkSLC2A4RG
Wikipedia pathwaysSLC2A4RG
Orthology - Evolution
OrthoDB56731
Phylogenetic Trees/Animal Genes : TreeFamSLC2A4RG
HOVERGENQ9NR83
HOGENOMQ9NR83
Homologs : HomoloGeneSLC2A4RG
Homology/Alignments : Family Browser (UCSC)SLC2A4RG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC2A4RG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A4RG
dbVarSLC2A4RG
ClinVarSLC2A4RG
1000_GenomesSLC2A4RG 
Exome Variant ServerSLC2A4RG
ExAC (Exome Aggregation Consortium)SLC2A4RG (select the gene name)
Genetic variants : HAPMAP56731
Genomic Variants (DGV)SLC2A4RG [DGVbeta]
DECIPHERSLC2A4RG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC2A4RG 
Mutations
ICGC Data PortalSLC2A4RG 
TCGA Data PortalSLC2A4RG 
Broad Tumor PortalSLC2A4RG
OASIS PortalSLC2A4RG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC2A4RG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC2A4RG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC2A4RG
DgiDB (Drug Gene Interaction Database)SLC2A4RG
DoCM (Curated mutations)SLC2A4RG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A4RG (select a term)
intoGenSLC2A4RG
Cancer3DSLC2A4RG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609493   
Orphanet
MedgenSLC2A4RG
Genetic Testing Registry SLC2A4RG
NextProtQ9NR83 [Medical]
TSGene56731
GENETestsSLC2A4RG
Target ValidationSLC2A4RG
Huge Navigator SLC2A4RG [HugePedia]
snp3D : Map Gene to Disease56731
BioCentury BCIQSLC2A4RG
ClinGenSLC2A4RG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56731
Chemical/Pharm GKB GenePA38052
Clinical trialSLC2A4RG
Miscellaneous
canSAR (ICR)SLC2A4RG (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A4RG
EVEXSLC2A4RG
GoPubMedSLC2A4RG
iHOPSLC2A4RG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:07 CEST 2017

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