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SLC2A6 (solute carrier family 2 member 6)

Identity

Alias_namessolute carrier family 2 (facilitated glucose transporter)
Alias_symbol (synonym)GLUT9
GLUT6
HSA011372
Other alias
HGNC (Hugo) SLC2A6
LocusID (NCBI) 11182
Atlas_Id 51105
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 133471094 and ends at 133479154 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC2A6 (9q34.2) / WDR90 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A6   11011
Cards
Entrez_Gene (NCBI)SLC2A6  11182  solute carrier family 2 member 6
AliasesGLUT6; GLUT9; HSA011372
GeneCards (Weizmann)SLC2A6
Ensembl hg19 (Hinxton)ENSG00000160326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160326 [Gene_View]  chr9:133471094-133479154 [Contig_View]  SLC2A6 [Vega]
ICGC DataPortalENSG00000160326
TCGA cBioPortalSLC2A6
AceView (NCBI)SLC2A6
Genatlas (Paris)SLC2A6
WikiGenes11182
SOURCE (Princeton)SLC2A6
Genetics Home Reference (NIH)SLC2A6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC2A6  -     chr9:133471094-133479154 -  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC2A6  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblSLC2A6 - 9q34.2 [CytoView hg19]  SLC2A6 - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBISLC2A6 [Mapview hg19]  SLC2A6 [Mapview hg38]
OMIM606813   
Gene and transcription
Genbank (Entrez)AB209108 AJ011372 AK074836 AK074927 AK096630
RefSeq transcript (Entrez)NM_001145099 NM_017585
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC2A6
Cluster EST : UnigeneHs.244378 [ NCBI ]
CGAP (NCI)Hs.244378
Alternative Splicing GalleryENSG00000160326
Gene ExpressionSLC2A6 [ NCBI-GEO ]   SLC2A6 [ EBI - ARRAY_EXPRESS ]   SLC2A6 [ SEEK ]   SLC2A6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC2A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11182
GTEX Portal (Tissue expression)SLC2A6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGQ3
Splice isoforms : SwissVarQ9UGQ3
PhosPhoSitePlusQ9UGQ3
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)    SUGAR_TRANSPORT_2 (PS00217)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like    Sugar/inositol_transpt    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC2A6
DMDM Disease mutations11182
Blocks (Seattle)SLC2A6
SuperfamilyQ9UGQ3
Human Protein AtlasENSG00000160326
Peptide AtlasQ9UGQ3
HPRD06010
IPIIPI00744602   IPI00179969   IPI01018198   IPI00556637   IPI00514529   IPI00515072   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGQ3
IntAct (EBI)Q9UGQ3
FunCoupENSG00000160326
BioGRIDSLC2A6
STRING (EMBL)SLC2A6
ZODIACSLC2A6
Ontologies - Pathways
QuickGOQ9UGQ3
Ontology : AmiGOsugar:proton symporter activity  glucose transmembrane transporter activity  glucose transmembrane transporter activity  plasma membrane  proton transport  membrane  integral component of membrane  hexose transmembrane transport  glucose import  D-glucose transmembrane transporter activity  glucose transmembrane transport  
Ontology : EGO-EBIsugar:proton symporter activity  glucose transmembrane transporter activity  glucose transmembrane transporter activity  plasma membrane  proton transport  membrane  integral component of membrane  hexose transmembrane transport  glucose import  D-glucose transmembrane transporter activity  glucose transmembrane transport  
NDEx NetworkSLC2A6
Atlas of Cancer Signalling NetworkSLC2A6
Wikipedia pathwaysSLC2A6
Orthology - Evolution
OrthoDB11182
GeneTree (enSembl)ENSG00000160326
Phylogenetic Trees/Animal Genes : TreeFamSLC2A6
HOVERGENQ9UGQ3
HOGENOMQ9UGQ3
Homologs : HomoloGeneSLC2A6
Homology/Alignments : Family Browser (UCSC)SLC2A6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC2A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A6
dbVarSLC2A6
ClinVarSLC2A6
1000_GenomesSLC2A6 
Exome Variant ServerSLC2A6
ExAC (Exome Aggregation Consortium)SLC2A6 (select the gene name)
Genetic variants : HAPMAP11182
Genomic Variants (DGV)SLC2A6 [DGVbeta]
DECIPHERSLC2A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC2A6 
Mutations
ICGC Data PortalSLC2A6 
TCGA Data PortalSLC2A6 
Broad Tumor PortalSLC2A6
OASIS PortalSLC2A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC2A6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC2A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC2A6
DgiDB (Drug Gene Interaction Database)SLC2A6
DoCM (Curated mutations)SLC2A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A6 (select a term)
intoGenSLC2A6
Cancer3DSLC2A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606813   
Orphanet
MedgenSLC2A6
Genetic Testing Registry SLC2A6
NextProtQ9UGQ3 [Medical]
TSGene11182
GENETestsSLC2A6
Target ValidationSLC2A6
Huge Navigator SLC2A6 [HugePedia]
snp3D : Map Gene to Disease11182
BioCentury BCIQSLC2A6
ClinGenSLC2A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11182
Chemical/Pharm GKB GenePA35881
Clinical trialSLC2A6
Miscellaneous
canSAR (ICR)SLC2A6 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A6
EVEXSLC2A6
GoPubMedSLC2A6
iHOPSLC2A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:48 CEST 2017

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