Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC2A8 (solute carrier family 2 member 8)

Identity

Alias_namessolute carrier family 2 (facilitated glucose transporter) member 8
solute carrier family 2 (facilitated glucose transporter), member 8
Alias_symbol (synonym)GLUTX1
GLUT8
Other alias
HGNC (Hugo) SLC2A8
LocusID (NCBI) 29988
Atlas_Id 51120
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 127397138 and ends at 127407891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ODF2 (9q34.11) / SLC2A8 (9q33.3)SLC2A8 (9q33.3) / GARNL3 (9q33.3)ODF2 9q34.11 / SLC2A8 9q33.3
SLC2A8 9q33.3 / GARNL3 9q33.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A8   13812
Cards
Entrez_Gene (NCBI)SLC2A8  29988  solute carrier family 2 member 8
AliasesGLUT8; GLUTX1
GeneCards (Weizmann)SLC2A8
Ensembl hg19 (Hinxton)ENSG00000136856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136856 [Gene_View]  chr9:127397138-127407891 [Contig_View]  SLC2A8 [Vega]
ICGC DataPortalENSG00000136856
TCGA cBioPortalSLC2A8
AceView (NCBI)SLC2A8
Genatlas (Paris)SLC2A8
WikiGenes29988
SOURCE (Princeton)SLC2A8
Genetics Home Reference (NIH)SLC2A8
Genomic and cartography
GoldenPath hg38 (UCSC)SLC2A8  -     chr9:127397138-127407891 +  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC2A8  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblSLC2A8 - 9q33.3 [CytoView hg19]  SLC2A8 - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBISLC2A8 [Mapview hg19]  SLC2A8 [Mapview hg38]
OMIM605245   
Gene and transcription
Genbank (Entrez)AB209112 AF289587 AI818661 AJ245937 BC019043
RefSeq transcript (Entrez)NM_001271711 NM_001271712 NM_014580
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC2A8
Cluster EST : UnigeneHs.179522 [ NCBI ]
CGAP (NCI)Hs.179522
Alternative Splicing GalleryENSG00000136856
Gene ExpressionSLC2A8 [ NCBI-GEO ]   SLC2A8 [ EBI - ARRAY_EXPRESS ]   SLC2A8 [ SEEK ]   SLC2A8 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC2A8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29988
GTEX Portal (Tissue expression)SLC2A8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY64
Splice isoforms : SwissVarQ9NY64
PhosPhoSitePlusQ9NY64
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)    SUGAR_TRANSPORT_2 (PS00217)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like    Sugar/inositol_transpt    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC2A8
DMDM Disease mutations29988
Blocks (Seattle)SLC2A8
SuperfamilyQ9NY64
Human Protein AtlasENSG00000136856
Peptide AtlasQ9NY64
HPRD05580
IPIIPI00302242   IPI00556370   IPI00103769   IPI00644490   IPI00479755   IPI00643430   IPI00478663   IPI00478225   IPI00644583   IPI00645156   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY64
IntAct (EBI)Q9NY64
FunCoupENSG00000136856
BioGRIDSLC2A8
STRING (EMBL)SLC2A8
ZODIACSLC2A8
Ontologies - Pathways
QuickGOQ9NY64
Ontology : AmiGOresponse to hypoxia  sugar:proton symporter activity  glucose transmembrane transporter activity  glucose binding  lysosomal membrane  plasma membrane  integral component of plasma membrane  carbohydrate metabolic process  male meiosis I  synaptic vesicle  insulin receptor signaling pathway  glucose transport  proton transport  clathrin-coated vesicle membrane  glucose import  D-glucose transmembrane transporter activity  membrane organization  glucose transmembrane transport  
Ontology : EGO-EBIresponse to hypoxia  sugar:proton symporter activity  glucose transmembrane transporter activity  glucose binding  lysosomal membrane  plasma membrane  integral component of plasma membrane  carbohydrate metabolic process  male meiosis I  synaptic vesicle  insulin receptor signaling pathway  glucose transport  proton transport  clathrin-coated vesicle membrane  glucose import  D-glucose transmembrane transporter activity  membrane organization  glucose transmembrane transport  
NDEx NetworkSLC2A8
Atlas of Cancer Signalling NetworkSLC2A8
Wikipedia pathwaysSLC2A8
Orthology - Evolution
OrthoDB29988
GeneTree (enSembl)ENSG00000136856
Phylogenetic Trees/Animal Genes : TreeFamSLC2A8
HOVERGENQ9NY64
HOGENOMQ9NY64
Homologs : HomoloGeneSLC2A8
Homology/Alignments : Family Browser (UCSC)SLC2A8
Gene fusions - Rearrangements
Fusion : MitelmanODF2/SLC2A8 [9q34.11/9q33.3]  [t(9;9)(q33;q34)]  
Fusion : MitelmanSLC2A8/GARNL3 [9q33.3/9q33.3]  [t(9;9)(q33;q33)]  
Fusion: TCGAODF2 9q34.11 SLC2A8 9q33.3 BRCA
Fusion: TCGASLC2A8 9q33.3 GARNL3 9q33.3 HNSC OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC2A8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A8
dbVarSLC2A8
ClinVarSLC2A8
1000_GenomesSLC2A8 
Exome Variant ServerSLC2A8
ExAC (Exome Aggregation Consortium)SLC2A8 (select the gene name)
Genetic variants : HAPMAP29988
Genomic Variants (DGV)SLC2A8 [DGVbeta]
DECIPHERSLC2A8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC2A8 
Mutations
ICGC Data PortalSLC2A8 
TCGA Data PortalSLC2A8 
Broad Tumor PortalSLC2A8
OASIS PortalSLC2A8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC2A8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC2A8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC2A8
DgiDB (Drug Gene Interaction Database)SLC2A8
DoCM (Curated mutations)SLC2A8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A8 (select a term)
intoGenSLC2A8
Cancer3DSLC2A8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605245   
Orphanet
MedgenSLC2A8
Genetic Testing Registry SLC2A8
NextProtQ9NY64 [Medical]
TSGene29988
GENETestsSLC2A8
Target ValidationSLC2A8
Huge Navigator SLC2A8 [HugePedia]
snp3D : Map Gene to Disease29988
BioCentury BCIQSLC2A8
ClinGenSLC2A8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29988
Chemical/Pharm GKB GenePA37813
Clinical trialSLC2A8
Miscellaneous
canSAR (ICR)SLC2A8 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A8
EVEXSLC2A8
GoPubMedSLC2A8
iHOPSLC2A8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:56:02 CEST 2017

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