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SLC2A9 (solute carrier family 2 member 9)

Identity

Alias_namessolute carrier family 2 (facilitated glucose transporter)
Alias_symbol (synonym)Glut9
GLUTX
URATv1
Other aliasGLUT9
UAQTL2
HGNC (Hugo) SLC2A9
LocusID (NCBI) 56606
Atlas_Id 55281
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9826224 and ends at 10040248 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC2A9 (4p16.1) / RAD51 (15q15.1)SLC30A9 (4p13) / SLC2A9 (4p16.1)SLC2A9 4p16.1 / RAD51 15q15.1
SLC30A9 4p13 / SLC2A9 4p16.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC2A9   13446
Cards
Entrez_Gene (NCBI)SLC2A9  56606  solute carrier family 2 member 9
AliasesGLUT9; GLUTX; UAQTL2; URATv1
GeneCards (Weizmann)SLC2A9
Ensembl hg19 (Hinxton)ENSG00000109667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109667 [Gene_View]  chr4:9826224-10040248 [Contig_View]  SLC2A9 [Vega]
ICGC DataPortalENSG00000109667
TCGA cBioPortalSLC2A9
AceView (NCBI)SLC2A9
Genatlas (Paris)SLC2A9
WikiGenes56606
SOURCE (Princeton)SLC2A9
Genetics Home Reference (NIH)SLC2A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC2A9  -     chr4:9826224-10040248 -  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC2A9  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblSLC2A9 - 4p16.1 [CytoView hg19]  SLC2A9 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBISLC2A9 [Mapview hg19]  SLC2A9 [Mapview hg38]
OMIM606142   612076   
Gene and transcription
Genbank (Entrez)AF210317 AF421859 AK096819 AK310895 AL572022
RefSeq transcript (Entrez)NM_001001290 NM_020041
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC2A9
Cluster EST : UnigeneHs.656895 [ NCBI ]
CGAP (NCI)Hs.656895
Alternative Splicing GalleryENSG00000109667
Gene ExpressionSLC2A9 [ NCBI-GEO ]   SLC2A9 [ EBI - ARRAY_EXPRESS ]   SLC2A9 [ SEEK ]   SLC2A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC2A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56606
GTEX Portal (Tissue expression)SLC2A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRM0
Splice isoforms : SwissVarQ9NRM0
PhosPhoSitePlusQ9NRM0
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)    SUGAR_TRANSPORT_2 (PS00217)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like    Sugar/inositol_transpt    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC2A9
DMDM Disease mutations56606
Blocks (Seattle)SLC2A9
SuperfamilyQ9NRM0
Human Protein AtlasENSG00000109667
Peptide AtlasQ9NRM0
HPRD05848
IPIIPI00024031   IPI00163506   IPI00967949   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRM0
IntAct (EBI)Q9NRM0
FunCoupENSG00000109667
BioGRIDSLC2A9
STRING (EMBL)SLC2A9
ZODIACSLC2A9
Ontologies - Pathways
QuickGOQ9NRM0
Ontology : AmiGOsugar:proton symporter activity  glucose transmembrane transporter activity  plasma membrane  urate transmembrane transporter activity  organic anion transport  glucose transport  proton transport  integral component of membrane  basolateral plasma membrane  apical plasma membrane  transmembrane transporter activity  urate metabolic process  organic acid transmembrane transport  glucose transmembrane transport  
Ontology : EGO-EBIsugar:proton symporter activity  glucose transmembrane transporter activity  plasma membrane  urate transmembrane transporter activity  organic anion transport  glucose transport  proton transport  integral component of membrane  basolateral plasma membrane  apical plasma membrane  transmembrane transporter activity  urate metabolic process  organic acid transmembrane transport  glucose transmembrane transport  
NDEx NetworkSLC2A9
Atlas of Cancer Signalling NetworkSLC2A9
Wikipedia pathwaysSLC2A9
Orthology - Evolution
OrthoDB56606
GeneTree (enSembl)ENSG00000109667
Phylogenetic Trees/Animal Genes : TreeFamSLC2A9
HOVERGENQ9NRM0
HOGENOMQ9NRM0
Homologs : HomoloGeneSLC2A9
Homology/Alignments : Family Browser (UCSC)SLC2A9
Gene fusions - Rearrangements
Fusion : MitelmanSLC2A9/RAD51 [4p16.1/15q15.1]  
Fusion : MitelmanSLC30A9/SLC2A9 [4p13/4p16.1]  [t(4;4)(p13;p16)]  
Fusion: TCGASLC2A9 4p16.1 RAD51 15q15.1 BLCA
Fusion: TCGASLC30A9 4p13 SLC2A9 4p16.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC2A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC2A9
dbVarSLC2A9
ClinVarSLC2A9
1000_GenomesSLC2A9 
Exome Variant ServerSLC2A9
ExAC (Exome Aggregation Consortium)SLC2A9 (select the gene name)
Genetic variants : HAPMAP56606
Genomic Variants (DGV)SLC2A9 [DGVbeta]
DECIPHERSLC2A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC2A9 
Mutations
ICGC Data PortalSLC2A9 
TCGA Data PortalSLC2A9 
Broad Tumor PortalSLC2A9
OASIS PortalSLC2A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC2A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC2A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC2A9
DgiDB (Drug Gene Interaction Database)SLC2A9
DoCM (Curated mutations)SLC2A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC2A9 (select a term)
intoGenSLC2A9
Cancer3DSLC2A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606142    612076   
Orphanet12557   
MedgenSLC2A9
Genetic Testing Registry SLC2A9
NextProtQ9NRM0 [Medical]
TSGene56606
GENETestsSLC2A9
Target ValidationSLC2A9
Huge Navigator SLC2A9 [HugePedia]
snp3D : Map Gene to Disease56606
BioCentury BCIQSLC2A9
ClinGenSLC2A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56606
Chemical/Pharm GKB GenePA37771
Clinical trialSLC2A9
Miscellaneous
canSAR (ICR)SLC2A9 (select the gene name)
Probes
Litterature
PubMed128 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC2A9
EVEXSLC2A9
GoPubMedSLC2A9
iHOPSLC2A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:02 CEST 2017

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