Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC30A2 (solute carrier family 30 member 2)

Identity

Alias_namesZNT2
solute carrier family 30 (zinc transporter), member 2
Other aliasPP12488
TNZD
ZnT-2
HGNC (Hugo) SLC30A2
LocusID (NCBI) 7780
Atlas_Id 73388
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26038022 and ends at 26046138 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC30A2   11013
Cards
Entrez_Gene (NCBI)SLC30A2  7780  solute carrier family 30 member 2
AliasesPP12488; TNZD; ZNT2; ZnT-2
GeneCards (Weizmann)SLC30A2
Ensembl hg19 (Hinxton)ENSG00000158014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158014 [Gene_View]  chr1:26038022-26046138 [Contig_View]  SLC30A2 [Vega]
ICGC DataPortalENSG00000158014
TCGA cBioPortalSLC30A2
AceView (NCBI)SLC30A2
Genatlas (Paris)SLC30A2
WikiGenes7780
SOURCE (Princeton)SLC30A2
Genetics Home Reference (NIH)SLC30A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A2  -     chr1:26038022-26046138 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A2  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblSLC30A2 - 1p36.11 [CytoView hg19]  SLC30A2 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBISLC30A2 [Mapview hg19]  SLC30A2 [Mapview hg38]
OMIM608118   609617   
Gene and transcription
Genbank (Entrez)AF370409 AI161067 AK023491 AK023504 AK094027
RefSeq transcript (Entrez)NM_001004434 NM_032513
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC30A2
Cluster EST : UnigeneHs.143545 [ NCBI ]
CGAP (NCI)Hs.143545
Alternative Splicing GalleryENSG00000158014
Gene ExpressionSLC30A2 [ NCBI-GEO ]   SLC30A2 [ EBI - ARRAY_EXPRESS ]   SLC30A2 [ SEEK ]   SLC30A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7780
GTEX Portal (Tissue expression)SLC30A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRI3
Splice isoforms : SwissVarQ9BRI3
PhosPhoSitePlusQ9BRI3
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_TMD   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A2
DMDM Disease mutations7780
Blocks (Seattle)SLC30A2
SuperfamilyQ9BRI3
Human Protein AtlasENSG00000158014
Peptide AtlasQ9BRI3
HPRD18057
IPIIPI00000131   IPI00435932   IPI00903201   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRI3
IntAct (EBI)Q9BRI3
FunCoupENSG00000158014
BioGRIDSLC30A2
STRING (EMBL)SLC30A2
ZODIACSLC30A2
Ontologies - Pathways
QuickGOQ9BRI3
Ontology : AmiGOzinc ion transmembrane transporter activity  protein binding  cytoplasm  lysosome  lysosomal membrane  late endosome  plasma membrane  response to zinc ion  integral component of membrane  intracellular membrane-bounded organelle  positive regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  protein binding  cytoplasm  lysosome  lysosomal membrane  late endosome  plasma membrane  response to zinc ion  integral component of membrane  intracellular membrane-bounded organelle  positive regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
NDEx NetworkSLC30A2
Atlas of Cancer Signalling NetworkSLC30A2
Wikipedia pathwaysSLC30A2
Orthology - Evolution
OrthoDB7780
GeneTree (enSembl)ENSG00000158014
Phylogenetic Trees/Animal Genes : TreeFamSLC30A2
HOVERGENQ9BRI3
HOGENOMQ9BRI3
Homologs : HomoloGeneSLC30A2
Homology/Alignments : Family Browser (UCSC)SLC30A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A2
dbVarSLC30A2
ClinVarSLC30A2
1000_GenomesSLC30A2 
Exome Variant ServerSLC30A2
ExAC (Exome Aggregation Consortium)SLC30A2 (select the gene name)
Genetic variants : HAPMAP7780
Genomic Variants (DGV)SLC30A2 [DGVbeta]
DECIPHERSLC30A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A2 
Mutations
ICGC Data PortalSLC30A2 
TCGA Data PortalSLC30A2 
Broad Tumor PortalSLC30A2
OASIS PortalSLC30A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC30A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC30A2
DgiDB (Drug Gene Interaction Database)SLC30A2
DoCM (Curated mutations)SLC30A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A2 (select a term)
intoGenSLC30A2
Cancer3DSLC30A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608118    609617   
Orphanet
MedgenSLC30A2
Genetic Testing Registry SLC30A2
NextProtQ9BRI3 [Medical]
TSGene7780
GENETestsSLC30A2
Target ValidationSLC30A2
Huge Navigator SLC30A2 [HugePedia]
snp3D : Map Gene to Disease7780
BioCentury BCIQSLC30A2
ClinGenSLC30A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7780
Chemical/Pharm GKB GenePA35883
Clinical trialSLC30A2
Miscellaneous
canSAR (ICR)SLC30A2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A2
EVEXSLC30A2
GoPubMedSLC30A2
iHOPSLC30A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:07 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.