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SLC30A2 (solute carrier family 30 member 2)

Identity

Alias (NCBI)PP12488
TNZD
ZNT2
ZnT-2
HGNC (Hugo) SLC30A2
HGNC Previous nameZNT2
HGNC Previous namesolute carrier family 30 (zinc transporter), member 2
LocusID (NCBI) 7780
Atlas_Id 73388
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26037252 and ends at 26046118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC30A2   11013
Cards
Entrez_Gene (NCBI)SLC30A2    solute carrier family 30 member 2
AliasesPP12488; TNZD; ZNT2; ZnT-2
GeneCards (Weizmann)SLC30A2
Ensembl hg19 (Hinxton)ENSG00000158014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158014 [Gene_View]  ENSG00000158014 [Sequence]  chr1:26037252-26046118 [Contig_View]  SLC30A2 [Vega]
ICGC DataPortalENSG00000158014
TCGA cBioPortalSLC30A2
AceView (NCBI)SLC30A2
Genatlas (Paris)SLC30A2
SOURCE (Princeton)SLC30A2
Genetics Home Reference (NIH)SLC30A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A2  -     chr1:26037252-26046118 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A2  -     1p36.11   [Description]    (hg19-Feb_2009)
GoldenPathSLC30A2 - 1p36.11 [CytoView hg19]  SLC30A2 - 1p36.11 [CytoView hg38]
ImmunoBaseENSG00000158014
Genome Data Viewer NCBISLC30A2 [Mapview hg19]  
OMIM608118   609617   
Gene and transcription
Genbank (Entrez)AF370409 AI161067 AK023491 AK023504 AK094027
RefSeq transcript (Entrez)NM_001004434 NM_032513
Consensus coding sequences : CCDS (NCBI)SLC30A2
Gene ExpressionSLC30A2 [ NCBI-GEO ]   SLC30A2 [ EBI - ARRAY_EXPRESS ]   SLC30A2 [ SEEK ]   SLC30A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A2 [ Firebrowse - Broad ]
GenevisibleExpression of SLC30A2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7780
GTEX Portal (Tissue expression)SLC30A2
Human Protein AtlasENSG00000158014-SLC30A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRI3
PhosPhoSitePlusQ9BRI3
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_CTD_sf    Cation_efflux_TMD_sf   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A2
SuperfamilyQ9BRI3
AlphaFold pdb e-kbQ9BRI3   
Human Protein Atlas [tissue]ENSG00000158014-SLC30A2 [tissue]
HPRD18057
Protein Interaction databases
DIP (DOE-UCLA)Q9BRI3
IntAct (EBI)Q9BRI3
BioGRIDSLC30A2
STRING (EMBL)SLC30A2
ZODIACSLC30A2
Ontologies - Pathways
QuickGOQ9BRI3
Ontology : AmiGOzinc ion transmembrane transporter activity  protein binding  cytoplasm  lysosomal membrane  late endosome  plasma membrane  response to zinc ion  integral component of membrane  identical protein binding  intracellular membrane-bounded organelle  regulation of sequestering of zinc ion  positive regulation of sequestering of zinc ion  zinc ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  protein binding  cytoplasm  lysosomal membrane  late endosome  plasma membrane  response to zinc ion  integral component of membrane  identical protein binding  intracellular membrane-bounded organelle  regulation of sequestering of zinc ion  positive regulation of sequestering of zinc ion  zinc ion transmembrane transport  
NDEx NetworkSLC30A2
Atlas of Cancer Signalling NetworkSLC30A2
Wikipedia pathwaysSLC30A2
Orthology - Evolution
OrthoDB7780
GeneTree (enSembl)ENSG00000158014
Phylogenetic Trees/Animal Genes : TreeFamSLC30A2
Homologs : HomoloGeneSLC30A2
Homology/Alignments : Family Browser (UCSC)SLC30A2
Gene fusions - Rearrangements
Fusion : QuiverSLC30A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A2
dbVarSLC30A2
ClinVarSLC30A2
MonarchSLC30A2
1000_GenomesSLC30A2 
Exome Variant ServerSLC30A2
GNOMAD BrowserENSG00000158014
Varsome BrowserSLC30A2
ACMGSLC30A2 variants
VarityQ9BRI3
Genomic Variants (DGV)SLC30A2 [DGVbeta]
DECIPHERSLC30A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A2 
Mutations
ICGC Data PortalSLC30A2 
TCGA Data PortalSLC30A2 
Broad Tumor PortalSLC30A2
OASIS PortalSLC30A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC30A2
Mutations and Diseases : HGMDSLC30A2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC30A2
DgiDB (Drug Gene Interaction Database)SLC30A2
DoCM (Curated mutations)SLC30A2
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A2
Cancer3DSLC30A2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608118    609617   
Orphanet
DisGeNETSLC30A2
MedgenSLC30A2
Genetic Testing Registry SLC30A2
NextProtQ9BRI3 [Medical]
GENETestsSLC30A2
Target ValidationSLC30A2
Huge Navigator SLC30A2 [HugePedia]
ClinGenSLC30A2
Clinical trials, drugs, therapy
MyCancerGenomeSLC30A2
Protein Interactions : CTDSLC30A2
Pharm GKB GenePA35883
PharosQ9BRI3
Clinical trialSLC30A2
Miscellaneous
canSAR (ICR)SLC30A2
HarmonizomeSLC30A2
DataMed IndexSLC30A2
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC30A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:56 CEST 2021

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