Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC30A3 (solute carrier family 30 (zinc transporter), member 3)

Identity

Alias_namesZNT3
solute carrier family 30 (zinc transporter), member 3
Other alias
HGNC (Hugo) SLC30A3
LocusID (NCBI) 7781
Atlas_Id 73389
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27477440 and ends at 27485960 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC30A3   11014
Cards
Entrez_Gene (NCBI)SLC30A3  7781  solute carrier family 30 (zinc transporter), member 3
AliasesZNT3
GeneCards (Weizmann)SLC30A3
Ensembl hg19 (Hinxton)ENSG00000115194 [Gene_View]  chr2:27477440-27485960 [Contig_View]  SLC30A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115194 [Gene_View]  chr2:27477440-27485960 [Contig_View]  SLC30A3 [Vega]
ICGC DataPortalENSG00000115194
TCGA cBioPortalSLC30A3
AceView (NCBI)SLC30A3
Genatlas (Paris)SLC30A3
WikiGenes7781
SOURCE (Princeton)SLC30A3
Genetics Home Reference (NIH)SLC30A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC30A3  -     chr2:27477440-27485960 -  2p23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC30A3  -     2p23.3   [Description]    (hg38-Dec_2013)
EnsemblSLC30A3 - 2p23.3 [CytoView hg19]  SLC30A3 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBISLC30A3 [Mapview hg19]  SLC30A3 [Mapview hg38]
OMIM602878   
Gene and transcription
Genbank (Entrez)AK127096 AK127300 AK302174 AK313600 AL043136
RefSeq transcript (Entrez)NM_003459
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)SLC30A3
Cluster EST : UnigeneHs.467981 [ NCBI ]
CGAP (NCI)Hs.467981
Alternative Splicing GalleryENSG00000115194
Gene ExpressionSLC30A3 [ NCBI-GEO ]   SLC30A3 [ EBI - ARRAY_EXPRESS ]   SLC30A3 [ SEEK ]   SLC30A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7781
GTEX Portal (Tissue expression)SLC30A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99726   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99726  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99726
Splice isoforms : SwissVarQ99726
PhosPhoSitePlusQ99726
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_TMD   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A3
DMDM Disease mutations7781
Blocks (Seattle)SLC30A3
SuperfamilyQ99726
Human Protein AtlasENSG00000115194
Peptide AtlasQ99726
HPRD11924
IPIIPI00293793   IPI00892739   IPI00893330   IPI00941947   IPI00893124   IPI00893911   IPI00893259   
Protein Interaction databases
DIP (DOE-UCLA)Q99726
IntAct (EBI)Q99726
FunCoupENSG00000115194
BioGRIDSLC30A3
STRING (EMBL)SLC30A3
ZODIACSLC30A3
Ontologies - Pathways
QuickGOQ99726
Ontology : AmiGOprotein binding  cytoplasm  endosome  late endosome  integral component of plasma membrane  transport  synaptic vesicle  zinc transporting ATPase activity  membrane  cell junction  synaptic vesicle membrane  neuron projection  positive regulation of transport  transmembrane transport  regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
Ontology : EGO-EBIprotein binding  cytoplasm  endosome  late endosome  integral component of plasma membrane  transport  synaptic vesicle  zinc transporting ATPase activity  membrane  cell junction  synaptic vesicle membrane  neuron projection  positive regulation of transport  transmembrane transport  regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
NDEx NetworkSLC30A3
Atlas of Cancer Signalling NetworkSLC30A3
Wikipedia pathwaysSLC30A3
Orthology - Evolution
OrthoDB7781
GeneTree (enSembl)ENSG00000115194
Phylogenetic Trees/Animal Genes : TreeFamSLC30A3
HOVERGENQ99726
HOGENOMQ99726
Homologs : HomoloGeneSLC30A3
Homology/Alignments : Family Browser (UCSC)SLC30A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A3
dbVarSLC30A3
ClinVarSLC30A3
1000_GenomesSLC30A3 
Exome Variant ServerSLC30A3
ExAC (Exome Aggregation Consortium)SLC30A3 (select the gene name)
Genetic variants : HAPMAP7781
Genomic Variants (DGV)SLC30A3 [DGVbeta]
DECIPHER (Syndromes)2:27477440-27485960  ENSG00000115194
CONAN: Copy Number AnalysisSLC30A3 
Mutations
ICGC Data PortalSLC30A3 
TCGA Data PortalSLC30A3 
Broad Tumor PortalSLC30A3
OASIS PortalSLC30A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC30A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC30A3
DgiDB (Drug Gene Interaction Database)SLC30A3
DoCM (Curated mutations)SLC30A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A3 (select a term)
intoGenSLC30A3
Cancer3DSLC30A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602878   
Orphanet
MedgenSLC30A3
Genetic Testing Registry SLC30A3
NextProtQ99726 [Medical]
TSGene7781
GENETestsSLC30A3
Huge Navigator SLC30A3 [HugePedia]
snp3D : Map Gene to Disease7781
BioCentury BCIQSLC30A3
ClinGenSLC30A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7781
Chemical/Pharm GKB GenePA35884
Clinical trialSLC30A3
Miscellaneous
canSAR (ICR)SLC30A3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A3
EVEXSLC30A3
GoPubMedSLC30A3
iHOPSLC30A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:37 CET 2017

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