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SLC30A4 (solute carrier family 30 member 4)

Identity

Alias_namesZNT4
solute carrier family 30 (zinc transporter)
Other aliasznT-4
HGNC (Hugo) SLC30A4
LocusID (NCBI) 7782
Atlas_Id 43894
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45502402 and ends at 45522804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RP11-744N12.3 () / SLC30A4 (15q21.1)SLC30A4 (15q21.1) / ETV1 (7p21.2)SLC30A4 (15q21.1) / RP11-744N12.3 ()
RP11-744N12.3 SLC30A4 15q21.1SLC30A4 15q21.1 RP11-744N12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC30A4   11015
Cards
Entrez_Gene (NCBI)SLC30A4  7782  solute carrier family 30 member 4
AliasesZNT4; znT-4
GeneCards (Weizmann)SLC30A4
Ensembl hg19 (Hinxton)ENSG00000104154 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104154 [Gene_View]  chr15:45502402-45522804 [Contig_View]  SLC30A4 [Vega]
ICGC DataPortalENSG00000104154
TCGA cBioPortalSLC30A4
AceView (NCBI)SLC30A4
Genatlas (Paris)SLC30A4
WikiGenes7782
SOURCE (Princeton)SLC30A4
Genetics Home Reference (NIH)SLC30A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A4  -     chr15:45502402-45522804 -  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A4  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblSLC30A4 - 15q21.1 [CytoView hg19]  SLC30A4 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBISLC30A4 [Mapview hg19]  SLC30A4 [Mapview hg38]
OMIM602095   
Gene and transcription
Genbank (Entrez)AA485220 AF025409 AK290874 AY029482 BC026089
RefSeq transcript (Entrez)NM_001321036 NM_013309
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC30A4
Cluster EST : UnigeneHs.375762 [ NCBI ]
CGAP (NCI)Hs.375762
Alternative Splicing GalleryENSG00000104154
Gene ExpressionSLC30A4 [ NCBI-GEO ]   SLC30A4 [ EBI - ARRAY_EXPRESS ]   SLC30A4 [ SEEK ]   SLC30A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7782
GTEX Portal (Tissue expression)SLC30A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14863   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14863  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14863
Splice isoforms : SwissVarO14863
PhosPhoSitePlusO14863
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_TMD   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A4
DMDM Disease mutations7782
Blocks (Seattle)SLC30A4
SuperfamilyO14863
Human Protein AtlasENSG00000104154
Peptide AtlasO14863
HPRD03651
IPIIPI00152263   
Protein Interaction databases
DIP (DOE-UCLA)O14863
IntAct (EBI)O14863
FunCoupENSG00000104154
BioGRIDSLC30A4
STRING (EMBL)SLC30A4
ZODIACSLC30A4
Ontologies - Pathways
QuickGOO14863
Ontology : AmiGOzinc ion transmembrane transporter activity  cytoplasm  lysosome  lysosomal membrane  late endosome  response to toxic substance  response to zinc ion  membrane  integral component of membrane  late endosome membrane  zinc ion homeostasis  regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  cytoplasm  lysosome  lysosomal membrane  late endosome  response to toxic substance  response to zinc ion  membrane  integral component of membrane  late endosome membrane  zinc ion homeostasis  regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
NDEx NetworkSLC30A4
Atlas of Cancer Signalling NetworkSLC30A4
Wikipedia pathwaysSLC30A4
Orthology - Evolution
OrthoDB7782
GeneTree (enSembl)ENSG00000104154
Phylogenetic Trees/Animal Genes : TreeFamSLC30A4
HOVERGENO14863
HOGENOMO14863
Homologs : HomoloGeneSLC30A4
Homology/Alignments : Family Browser (UCSC)SLC30A4
Gene fusions - Rearrangements
Fusion: TCGARP11-744N12.3 SLC30A4 15q21.1 PRAD
Fusion: TCGASLC30A4 15q21.1 RP11-744N12.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A4
dbVarSLC30A4
ClinVarSLC30A4
1000_GenomesSLC30A4 
Exome Variant ServerSLC30A4
ExAC (Exome Aggregation Consortium)SLC30A4 (select the gene name)
Genetic variants : HAPMAP7782
Genomic Variants (DGV)SLC30A4 [DGVbeta]
DECIPHERSLC30A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A4 
Mutations
ICGC Data PortalSLC30A4 
TCGA Data PortalSLC30A4 
Broad Tumor PortalSLC30A4
OASIS PortalSLC30A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC30A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC30A4
DgiDB (Drug Gene Interaction Database)SLC30A4
DoCM (Curated mutations)SLC30A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A4 (select a term)
intoGenSLC30A4
Cancer3DSLC30A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602095   
Orphanet
MedgenSLC30A4
Genetic Testing Registry SLC30A4
NextProtO14863 [Medical]
TSGene7782
GENETestsSLC30A4
Target ValidationSLC30A4
Huge Navigator SLC30A4 [HugePedia]
snp3D : Map Gene to Disease7782
BioCentury BCIQSLC30A4
ClinGenSLC30A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7782
Chemical/Pharm GKB GenePA35885
Clinical trialSLC30A4
Miscellaneous
canSAR (ICR)SLC30A4 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A4
EVEXSLC30A4
GoPubMedSLC30A4
iHOPSLC30A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:03 CEST 2017

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