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SLC30A5 (solute carrier family 30 member 5)

Identity

Alias_namessolute carrier family 30 (zinc transporter), member 5
Alias_symbol (synonym)ZTL1
ZnT-5
FLJ12496
FLJ12756
ZNT5
MGC5499
ZNTL1
Other alias
HGNC (Hugo) SLC30A5
LocusID (NCBI) 64924
Atlas_Id 73390
Location 5q13.1  [Link to chromosome band 5q13]
Location_base_pair Starts at 69093949 and ends at 69104740 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KIAA0922 (4q31.3) / SLC30A5 (5q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC30A5   19089
Cards
Entrez_Gene (NCBI)SLC30A5  64924  solute carrier family 30 member 5
AliasesZNT5; ZNTL1; ZTL1; ZnT-5
GeneCards (Weizmann)SLC30A5
Ensembl hg19 (Hinxton)ENSG00000145740 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145740 [Gene_View]  chr5:69093949-69104740 [Contig_View]  SLC30A5 [Vega]
ICGC DataPortalENSG00000145740
TCGA cBioPortalSLC30A5
AceView (NCBI)SLC30A5
Genatlas (Paris)SLC30A5
WikiGenes64924
SOURCE (Princeton)SLC30A5
Genetics Home Reference (NIH)SLC30A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A5  -     chr5:69093949-69104740 +  5q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A5  -     5q13.1   [Description]    (hg19-Feb_2009)
EnsemblSLC30A5 - 5q13.1 [CytoView hg19]  SLC30A5 - 5q13.1 [CytoView hg38]
Mapping of homologs : NCBISLC30A5 [Mapview hg19]  SLC30A5 [Mapview hg38]
OMIM607819   
Gene and transcription
Genbank (Entrez)AF212235 AF461760 AK022558 AK022818 AK292925
RefSeq transcript (Entrez)NM_001251969 NM_022902 NM_024055
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC30A5
Cluster EST : UnigeneHs.631975 [ NCBI ]
CGAP (NCI)Hs.631975
Alternative Splicing GalleryENSG00000145740
Gene ExpressionSLC30A5 [ NCBI-GEO ]   SLC30A5 [ EBI - ARRAY_EXPRESS ]   SLC30A5 [ SEEK ]   SLC30A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64924
GTEX Portal (Tissue expression)SLC30A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAD4
Splice isoforms : SwissVarQ8TAD4
PhosPhoSitePlusQ8TAD4
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_TMD   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A5
DMDM Disease mutations64924
Blocks (Seattle)SLC30A5
SuperfamilyQ8TAD4
Human Protein AtlasENSG00000145740
Peptide AtlasQ8TAD4
HPRD06381
IPIIPI00465310   IPI00879784   IPI00981336   IPI00031593   IPI00964331   IPI00964040   IPI00922427   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAD4
IntAct (EBI)Q8TAD4
FunCoupENSG00000145740
BioGRIDSLC30A5
STRING (EMBL)SLC30A5
ZODIACSLC30A5
Ontologies - Pathways
QuickGOQ8TAD4
Ontology : AmiGOzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  nucleus  nucleolus  Golgi apparatus  integral component of plasma membrane  cobalt ion transport  zinc II ion transport  cellular zinc ion homeostasis  zinc ion binding  response to zinc ion  regulation of proton transport  membrane  apical plasma membrane  secretory granule  secretory granule membrane  regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  nucleus  nucleolus  Golgi apparatus  integral component of plasma membrane  cobalt ion transport  zinc II ion transport  cellular zinc ion homeostasis  zinc ion binding  response to zinc ion  regulation of proton transport  membrane  apical plasma membrane  secretory granule  secretory granule membrane  regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
NDEx NetworkSLC30A5
Atlas of Cancer Signalling NetworkSLC30A5
Wikipedia pathwaysSLC30A5
Orthology - Evolution
OrthoDB64924
GeneTree (enSembl)ENSG00000145740
Phylogenetic Trees/Animal Genes : TreeFamSLC30A5
HOVERGENQ8TAD4
HOGENOMQ8TAD4
Homologs : HomoloGeneSLC30A5
Homology/Alignments : Family Browser (UCSC)SLC30A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A5
dbVarSLC30A5
ClinVarSLC30A5
1000_GenomesSLC30A5 
Exome Variant ServerSLC30A5
ExAC (Exome Aggregation Consortium)SLC30A5 (select the gene name)
Genetic variants : HAPMAP64924
Genomic Variants (DGV)SLC30A5 [DGVbeta]
DECIPHERSLC30A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A5 
Mutations
ICGC Data PortalSLC30A5 
TCGA Data PortalSLC30A5 
Broad Tumor PortalSLC30A5
OASIS PortalSLC30A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC30A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC30A5
DgiDB (Drug Gene Interaction Database)SLC30A5
DoCM (Curated mutations)SLC30A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A5 (select a term)
intoGenSLC30A5
Cancer3DSLC30A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607819   
Orphanet
MedgenSLC30A5
Genetic Testing Registry SLC30A5
NextProtQ8TAD4 [Medical]
TSGene64924
GENETestsSLC30A5
Target ValidationSLC30A5
Huge Navigator SLC30A5 [HugePedia]
snp3D : Map Gene to Disease64924
BioCentury BCIQSLC30A5
ClinGenSLC30A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64924
Chemical/Pharm GKB GenePA134865113
Clinical trialSLC30A5
Miscellaneous
canSAR (ICR)SLC30A5 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A5
EVEXSLC30A5
GoPubMedSLC30A5
iHOPSLC30A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:07 CEST 2017

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