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SLC30A6 (solute carrier family 30 member 6)

Identity

Alias_namessolute carrier family 30 (zinc transporter), member 6
Alias_symbol (synonym)FLJ31101
ZNT6
Other aliasMST103
MSTP103
HGNC (Hugo) SLC30A6
LocusID (NCBI) 55676
Atlas_Id 73391
Location 2p22.3  [Link to chromosome band 2p22]
Location_base_pair Starts at 32165841 and ends at 32224379 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FHIT (3p14.2) / SLC30A6 (2p22.3)SLC30A6 (2p22.3) / BRE (2p23.2)SLC30A6 (2p22.3) / EGFLAM (5p13.2)
SLC30A6 (2p22.3) / RASSF3 (12q14.2)SLC30A6 (2p22.3) / RHBDD1 (2q36.3)SLC30A6 (2p22.3) / UGGT1 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC30A6   19305
Cards
Entrez_Gene (NCBI)SLC30A6  55676  solute carrier family 30 member 6
AliasesMST103; MSTP103; ZNT6
GeneCards (Weizmann)SLC30A6
Ensembl hg19 (Hinxton)ENSG00000152683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152683 [Gene_View]  chr2:32165841-32224379 [Contig_View]  SLC30A6 [Vega]
ICGC DataPortalENSG00000152683
TCGA cBioPortalSLC30A6
AceView (NCBI)SLC30A6
Genatlas (Paris)SLC30A6
WikiGenes55676
SOURCE (Princeton)SLC30A6
Genetics Home Reference (NIH)SLC30A6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A6  -     chr2:32165841-32224379 +  2p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A6  -     2p22.3   [Description]    (hg19-Feb_2009)
EnsemblSLC30A6 - 2p22.3 [CytoView hg19]  SLC30A6 - 2p22.3 [CytoView hg38]
Mapping of homologs : NCBISLC30A6 [Mapview hg19]  SLC30A6 [Mapview hg38]
OMIM611148   
Gene and transcription
Genbank (Entrez)AA594503 AF173387 AI401266 AK055663 AK096672
RefSeq transcript (Entrez)NM_001193513 NM_001193514 NM_001193515 NM_001330476 NM_001330477 NM_001330478 NM_001330479 NM_017964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC30A6
Cluster EST : UnigeneHs.23248 [ NCBI ]
CGAP (NCI)Hs.23248
Alternative Splicing GalleryENSG00000152683
Gene ExpressionSLC30A6 [ NCBI-GEO ]   SLC30A6 [ EBI - ARRAY_EXPRESS ]   SLC30A6 [ SEEK ]   SLC30A6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55676
GTEX Portal (Tissue expression)SLC30A6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXT4
Splice isoforms : SwissVarQ6NXT4
PhosPhoSitePlusQ6NXT4
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_TMD   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A6
DMDM Disease mutations55676
Blocks (Seattle)SLC30A6
SuperfamilyQ6NXT4
Human Protein AtlasENSG00000152683
Peptide AtlasQ6NXT4
HPRD15368
IPIIPI00102329   IPI00433491   IPI00876868   IPI01009565   IPI00386016   IPI00894292   IPI00894421   IPI01012756   IPI00892516   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXT4
IntAct (EBI)Q6NXT4
FunCoupENSG00000152683
BioGRIDSLC30A6
STRING (EMBL)SLC30A6
ZODIACSLC30A6
Ontologies - Pathways
QuickGOQ6NXT4
Ontology : AmiGOGolgi membrane  zinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  Golgi apparatus  response to zinc ion  membrane  integral component of membrane  regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
Ontology : EGO-EBIGolgi membrane  zinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  Golgi apparatus  response to zinc ion  membrane  integral component of membrane  regulation of sequestering of zinc ion  zinc II ion transmembrane transport  
NDEx NetworkSLC30A6
Atlas of Cancer Signalling NetworkSLC30A6
Wikipedia pathwaysSLC30A6
Orthology - Evolution
OrthoDB55676
GeneTree (enSembl)ENSG00000152683
Phylogenetic Trees/Animal Genes : TreeFamSLC30A6
HOVERGENQ6NXT4
HOGENOMQ6NXT4
Homologs : HomoloGeneSLC30A6
Homology/Alignments : Family Browser (UCSC)SLC30A6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A6
dbVarSLC30A6
ClinVarSLC30A6
1000_GenomesSLC30A6 
Exome Variant ServerSLC30A6
ExAC (Exome Aggregation Consortium)SLC30A6 (select the gene name)
Genetic variants : HAPMAP55676
Genomic Variants (DGV)SLC30A6 [DGVbeta]
DECIPHERSLC30A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A6 
Mutations
ICGC Data PortalSLC30A6 
TCGA Data PortalSLC30A6 
Broad Tumor PortalSLC30A6
OASIS PortalSLC30A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC30A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC30A6
DgiDB (Drug Gene Interaction Database)SLC30A6
DoCM (Curated mutations)SLC30A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A6 (select a term)
intoGenSLC30A6
Cancer3DSLC30A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611148   
Orphanet
MedgenSLC30A6
Genetic Testing Registry SLC30A6
NextProtQ6NXT4 [Medical]
TSGene55676
GENETestsSLC30A6
Huge Navigator SLC30A6 [HugePedia]
snp3D : Map Gene to Disease55676
BioCentury BCIQSLC30A6
ClinGenSLC30A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55676
Chemical/Pharm GKB GenePA134923067
Clinical trialSLC30A6
Miscellaneous
canSAR (ICR)SLC30A6 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A6
EVEXSLC30A6
GoPubMedSLC30A6
iHOPSLC30A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:53:32 CEST 2017

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