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SLC30A9 (solute carrier family 30 member 9)

Identity

Alias_namesC4orf1
chromosome 4 open reading frame 1
solute carrier family 30 (zinc transporter), member 9
Alias_symbol (synonym)HUEL
ZNT9
GAC63
Other alias
HGNC (Hugo) SLC30A9
LocusID (NCBI) 10463
Atlas_Id 51399
Location 4p13  [Link to chromosome band 4p13]
Location_base_pair Starts at 41990506 and ends at 42087534 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EMSY (11q13.5) / SLC30A9 (4p13)NIPBL (5p13.2) / SLC30A9 (4p13)SLC30A9 (4p13) / HOXC6 (12q13.13)
SLC30A9 (4p13) / SLC2A9 (4p16.1)SLC30A9 (4p13) / SLC30A9 (4p13)SLC30A9 (4p13) / XRCC2 (7q36.1)
NIPBL 5p13.2 / SLC30A9 4p13SLC30A9 4p13 / SLC2A9 4p16.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC30A9   1329
Cards
Entrez_Gene (NCBI)SLC30A9  10463  solute carrier family 30 member 9
AliasesC4orf1; GAC63; HUEL; ZNT9
GeneCards (Weizmann)SLC30A9
Ensembl hg19 (Hinxton)ENSG00000014824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000014824 [Gene_View]  chr4:41990506-42087534 [Contig_View]  SLC30A9 [Vega]
ICGC DataPortalENSG00000014824
TCGA cBioPortalSLC30A9
AceView (NCBI)SLC30A9
Genatlas (Paris)SLC30A9
WikiGenes10463
SOURCE (Princeton)SLC30A9
Genetics Home Reference (NIH)SLC30A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC30A9  -     chr4:41990506-42087534 +  4p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC30A9  -     4p13   [Description]    (hg19-Feb_2009)
EnsemblSLC30A9 - 4p13 [CytoView hg19]  SLC30A9 - 4p13 [CytoView hg38]
Mapping of homologs : NCBISLC30A9 [Mapview hg19]  SLC30A9 [Mapview hg38]
OMIM604604   
Gene and transcription
Genbank (Entrez)AA427879 AF006621 AK225470 AK299917 AK312838
RefSeq transcript (Entrez)NM_006345
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC30A9
Cluster EST : UnigeneHs.479634 [ NCBI ]
CGAP (NCI)Hs.479634
Alternative Splicing GalleryENSG00000014824
Gene ExpressionSLC30A9 [ NCBI-GEO ]   SLC30A9 [ EBI - ARRAY_EXPRESS ]   SLC30A9 [ SEEK ]   SLC30A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC30A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10463
GTEX Portal (Tissue expression)SLC30A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PML9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PML9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PML9
Splice isoforms : SwissVarQ6PML9
PhosPhoSitePlusQ6PML9
Domains : Interpro (EBI)Cation_efflux    Cation_efflux_TMD    DNA-bd_dom_put    XPA_C   
Domain families : Pfam (Sanger)Cation_efflux (PF01545)   
Domain families : Pfam (NCBI)pfam01545   
Conserved Domain (NCBI)SLC30A9
DMDM Disease mutations10463
Blocks (Seattle)SLC30A9
PDB (SRS)2ENK   
PDB (PDBSum)2ENK   
PDB (IMB)2ENK   
PDB (RSDB)2ENK   
Structural Biology KnowledgeBase2ENK   
SCOP (Structural Classification of Proteins)2ENK   
CATH (Classification of proteins structures)2ENK   
SuperfamilyQ6PML9
Human Protein AtlasENSG00000014824
Peptide AtlasQ6PML9
HPRD06858
IPIIPI00552548   IPI01013768   IPI00964470   
Protein Interaction databases
DIP (DOE-UCLA)Q6PML9
IntAct (EBI)Q6PML9
FunCoupENSG00000014824
BioGRIDSLC30A9
STRING (EMBL)SLC30A9
ZODIACSLC30A9
Ontologies - Pathways
QuickGOQ6PML9
Ontology : AmiGOchromatin binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoskeleton  nucleotide-excision repair  transcription, DNA-templated  zinc II ion transport  cation transmembrane transporter activity  integral component of membrane  ligand-dependent nuclear receptor binding  ligand-dependent nuclear receptor transcription coactivator activity  positive regulation of transcription from RNA polymerase II promoter  cation transmembrane transport  
Ontology : EGO-EBIchromatin binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoskeleton  nucleotide-excision repair  transcription, DNA-templated  zinc II ion transport  cation transmembrane transporter activity  integral component of membrane  ligand-dependent nuclear receptor binding  ligand-dependent nuclear receptor transcription coactivator activity  positive regulation of transcription from RNA polymerase II promoter  cation transmembrane transport  
NDEx NetworkSLC30A9
Atlas of Cancer Signalling NetworkSLC30A9
Wikipedia pathwaysSLC30A9
Orthology - Evolution
OrthoDB10463
GeneTree (enSembl)ENSG00000014824
Phylogenetic Trees/Animal Genes : TreeFamSLC30A9
HOVERGENQ6PML9
HOGENOMQ6PML9
Homologs : HomoloGeneSLC30A9
Homology/Alignments : Family Browser (UCSC)SLC30A9
Gene fusions - Rearrangements
Fusion : MitelmanNIPBL/SLC30A9 [5p13.2/4p13]  [t(4;5)(p13;p13)]  
Fusion : MitelmanSLC30A9/SLC2A9 [4p13/4p16.1]  [t(4;4)(p13;p16)]  
Fusion: TCGANIPBL 5p13.2 SLC30A9 4p13 BRCA
Fusion: TCGASLC30A9 4p13 SLC2A9 4p16.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC30A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC30A9
dbVarSLC30A9
ClinVarSLC30A9
1000_GenomesSLC30A9 
Exome Variant ServerSLC30A9
ExAC (Exome Aggregation Consortium)SLC30A9 (select the gene name)
Genetic variants : HAPMAP10463
Genomic Variants (DGV)SLC30A9 [DGVbeta]
DECIPHERSLC30A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC30A9 
Mutations
ICGC Data PortalSLC30A9 
TCGA Data PortalSLC30A9 
Broad Tumor PortalSLC30A9
OASIS PortalSLC30A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC30A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC30A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC30A9
DgiDB (Drug Gene Interaction Database)SLC30A9
DoCM (Curated mutations)SLC30A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC30A9 (select a term)
intoGenSLC30A9
Cancer3DSLC30A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604604   
Orphanet
MedgenSLC30A9
Genetic Testing Registry SLC30A9
NextProtQ6PML9 [Medical]
TSGene10463
GENETestsSLC30A9
Target ValidationSLC30A9
Huge Navigator SLC30A9 [HugePedia]
snp3D : Map Gene to Disease10463
BioCentury BCIQSLC30A9
ClinGenSLC30A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10463
Chemical/Pharm GKB GenePA25909
Clinical trialSLC30A9
Miscellaneous
canSAR (ICR)SLC30A9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC30A9
EVEXSLC30A9
GoPubMedSLC30A9
iHOPSLC30A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:31:36 CEST 2017

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