Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC31A1 (solute carrier family 31 member 1)

Identity

Alias_namesCOPT1
solute carrier family 31 (copper transporter)
Alias_symbol (synonym)hCTR1
CTR1
Other alias
HGNC (Hugo) SLC31A1
LocusID (NCBI) 1317
Atlas_Id 50996
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 113221528 and ends at 113264492 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC31A1   11016
Cards
Entrez_Gene (NCBI)SLC31A1  1317  solute carrier family 31 member 1
AliasesCOPT1; CTR1
GeneCards (Weizmann)SLC31A1
Ensembl hg19 (Hinxton)ENSG00000136868 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136868 [Gene_View]  chr9:113221528-113264492 [Contig_View]  SLC31A1 [Vega]
ICGC DataPortalENSG00000136868
TCGA cBioPortalSLC31A1
AceView (NCBI)SLC31A1
Genatlas (Paris)SLC31A1
WikiGenes1317
SOURCE (Princeton)SLC31A1
Genetics Home Reference (NIH)SLC31A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC31A1  -     chr9:113221528-113264492 +  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC31A1  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblSLC31A1 - 9q32 [CytoView hg19]  SLC31A1 - 9q32 [CytoView hg38]
Mapping of homologs : NCBISLC31A1 [Mapview hg19]  SLC31A1 [Mapview hg38]
OMIM603085   
Gene and transcription
Genbank (Entrez)AK056926 AK129613 AK222866 AK292511 AL831843
RefSeq transcript (Entrez)NM_001859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC31A1
Cluster EST : UnigeneHs.532315 [ NCBI ]
CGAP (NCI)Hs.532315
Alternative Splicing GalleryENSG00000136868
Gene ExpressionSLC31A1 [ NCBI-GEO ]   SLC31A1 [ EBI - ARRAY_EXPRESS ]   SLC31A1 [ SEEK ]   SLC31A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC31A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1317
GTEX Portal (Tissue expression)SLC31A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15431   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15431  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15431
Splice isoforms : SwissVarO15431
PhosPhoSitePlusO15431
Domains : Interpro (EBI)Cop_transporter   
Domain families : Pfam (Sanger)Ctr (PF04145)   
Domain families : Pfam (NCBI)pfam04145   
Conserved Domain (NCBI)SLC31A1
DMDM Disease mutations1317
Blocks (Seattle)SLC31A1
PDB (SRS)2LS2    2LS3    2LS4   
PDB (PDBSum)2LS2    2LS3    2LS4   
PDB (IMB)2LS2    2LS3    2LS4   
PDB (RSDB)2LS2    2LS3    2LS4   
Structural Biology KnowledgeBase2LS2    2LS3    2LS4   
SCOP (Structural Classification of Proteins)2LS2    2LS3    2LS4   
CATH (Classification of proteins structures)2LS2    2LS3    2LS4   
SuperfamilyO15431
Human Protein AtlasENSG00000136868
Peptide AtlasO15431
HPRD04362
IPIIPI00006672   IPI00644505   
Protein Interaction databases
DIP (DOE-UCLA)O15431
IntAct (EBI)O15431
FunCoupENSG00000136868
BioGRIDSLC31A1
STRING (EMBL)SLC31A1
ZODIACSLC31A1
Ontologies - Pathways
QuickGOO15431
Ontology : AmiGOcopper ion transmembrane transporter activity  late endosome  plasma membrane  integral component of plasma membrane  copper ion transport  drug transmembrane transport  cellular copper ion homeostasis  copper uptake transmembrane transporter activity  neuronal cell body  recycling endosome  cellular response to cisplatin  copper ion import across plasma membrane  
Ontology : EGO-EBIcopper ion transmembrane transporter activity  late endosome  plasma membrane  integral component of plasma membrane  copper ion transport  drug transmembrane transport  cellular copper ion homeostasis  copper uptake transmembrane transporter activity  neuronal cell body  recycling endosome  cellular response to cisplatin  copper ion import across plasma membrane  
Pathways : KEGGMineral absorption   
NDEx NetworkSLC31A1
Atlas of Cancer Signalling NetworkSLC31A1
Wikipedia pathwaysSLC31A1
Orthology - Evolution
OrthoDB1317
GeneTree (enSembl)ENSG00000136868
Phylogenetic Trees/Animal Genes : TreeFamSLC31A1
HOVERGENO15431
HOGENOMO15431
Homologs : HomoloGeneSLC31A1
Homology/Alignments : Family Browser (UCSC)SLC31A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC31A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC31A1
dbVarSLC31A1
ClinVarSLC31A1
1000_GenomesSLC31A1 
Exome Variant ServerSLC31A1
ExAC (Exome Aggregation Consortium)SLC31A1 (select the gene name)
Genetic variants : HAPMAP1317
Genomic Variants (DGV)SLC31A1 [DGVbeta]
DECIPHERSLC31A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC31A1 
Mutations
ICGC Data PortalSLC31A1 
TCGA Data PortalSLC31A1 
Broad Tumor PortalSLC31A1
OASIS PortalSLC31A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC31A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC31A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC31A1
DgiDB (Drug Gene Interaction Database)SLC31A1
DoCM (Curated mutations)SLC31A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC31A1 (select a term)
intoGenSLC31A1
Cancer3DSLC31A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603085   
Orphanet
MedgenSLC31A1
Genetic Testing Registry SLC31A1
NextProtO15431 [Medical]
TSGene1317
GENETestsSLC31A1
Target ValidationSLC31A1
Huge Navigator SLC31A1 [HugePedia]
snp3D : Map Gene to Disease1317
BioCentury BCIQSLC31A1
ClinGenSLC31A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1317
Chemical/Pharm GKB GenePA118
Clinical trialSLC31A1
Miscellaneous
canSAR (ICR)SLC31A1 (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC31A1
EVEXSLC31A1
GoPubMedSLC31A1
iHOPSLC31A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:49 CEST 2017

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