Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC31A2 (solute carrier family 31 member 2)

Identity

Alias_namesCOPT2
solute carrier family 31 (copper transporter)
Alias_symbol (synonym)hCTR2
CTR2
Other alias
HGNC (Hugo) SLC31A2
LocusID (NCBI) 1318
Atlas_Id 51206
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 115913238 and ends at 115926422 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC31A2   11017
Cards
Entrez_Gene (NCBI)SLC31A2  1318  solute carrier family 31 member 2
AliasesCOPT2; CTR2; hCTR2
GeneCards (Weizmann)SLC31A2
Ensembl hg19 (Hinxton)ENSG00000136867 [Gene_View]  chr9:115913238-115926422 [Contig_View]  SLC31A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136867 [Gene_View]  chr9:115913238-115926422 [Contig_View]  SLC31A2 [Vega]
ICGC DataPortalENSG00000136867
TCGA cBioPortalSLC31A2
AceView (NCBI)SLC31A2
Genatlas (Paris)SLC31A2
WikiGenes1318
SOURCE (Princeton)SLC31A2
Genetics Home Reference (NIH)SLC31A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC31A2  -     chr9:115913238-115926422 +  9q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC31A2  -     9q32   [Description]    (hg38-Dec_2013)
EnsemblSLC31A2 - 9q32 [CytoView hg19]  SLC31A2 - 9q32 [CytoView hg38]
Mapping of homologs : NCBISLC31A2 [Mapview hg19]  SLC31A2 [Mapview hg38]
OMIM603088   
Gene and transcription
Genbank (Entrez)AK057903 AK131071 AK131546 AK295544 BC026252
RefSeq transcript (Entrez)NM_001860
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SLC31A2
Cluster EST : UnigeneHs.24030 [ NCBI ]
CGAP (NCI)Hs.24030
Alternative Splicing GalleryENSG00000136867
Gene ExpressionSLC31A2 [ NCBI-GEO ]   SLC31A2 [ EBI - ARRAY_EXPRESS ]   SLC31A2 [ SEEK ]   SLC31A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC31A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1318
GTEX Portal (Tissue expression)SLC31A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15432   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15432  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15432
Splice isoforms : SwissVarO15432
PhosPhoSitePlusO15432
Domains : Interpro (EBI)Cop_transporter   
Domain families : Pfam (Sanger)Ctr (PF04145)   
Domain families : Pfam (NCBI)pfam04145   
Conserved Domain (NCBI)SLC31A2
DMDM Disease mutations1318
Blocks (Seattle)SLC31A2
SuperfamilyO15432
Human Protein AtlasENSG00000136867
Peptide AtlasO15432
HPRD04365
IPIIPI00909915   IPI00006673   IPI00856113   
Protein Interaction databases
DIP (DOE-UCLA)O15432
IntAct (EBI)O15432
FunCoupENSG00000136867
BioGRIDSLC31A2
STRING (EMBL)SLC31A2
ZODIACSLC31A2
Ontologies - Pathways
QuickGOO15432
Ontology : AmiGOcopper ion transmembrane transporter activity  late endosome  integral component of plasma membrane  copper ion transport  cellular copper ion homeostasis  copper ion transmembrane transport  recycling endosome  regulation of copper ion transmembrane transport  
Ontology : EGO-EBIcopper ion transmembrane transporter activity  late endosome  integral component of plasma membrane  copper ion transport  cellular copper ion homeostasis  copper ion transmembrane transport  recycling endosome  regulation of copper ion transmembrane transport  
NDEx NetworkSLC31A2
Atlas of Cancer Signalling NetworkSLC31A2
Wikipedia pathwaysSLC31A2
Orthology - Evolution
OrthoDB1318
GeneTree (enSembl)ENSG00000136867
Phylogenetic Trees/Animal Genes : TreeFamSLC31A2
HOVERGENO15432
HOGENOMO15432
Homologs : HomoloGeneSLC31A2
Homology/Alignments : Family Browser (UCSC)SLC31A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC31A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC31A2
dbVarSLC31A2
ClinVarSLC31A2
1000_GenomesSLC31A2 
Exome Variant ServerSLC31A2
ExAC (Exome Aggregation Consortium)SLC31A2 (select the gene name)
Genetic variants : HAPMAP1318
Genomic Variants (DGV)SLC31A2 [DGVbeta]
DECIPHER (Syndromes)9:115913238-115926422  ENSG00000136867
CONAN: Copy Number AnalysisSLC31A2 
Mutations
ICGC Data PortalSLC31A2 
TCGA Data PortalSLC31A2 
Broad Tumor PortalSLC31A2
OASIS PortalSLC31A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC31A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC31A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC31A2
DgiDB (Drug Gene Interaction Database)SLC31A2
DoCM (Curated mutations)SLC31A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC31A2 (select a term)
intoGenSLC31A2
Cancer3DSLC31A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603088   
Orphanet
MedgenSLC31A2
Genetic Testing Registry SLC31A2
NextProtO15432 [Medical]
TSGene1318
GENETestsSLC31A2
Huge Navigator SLC31A2 [HugePedia]
snp3D : Map Gene to Disease1318
BioCentury BCIQSLC31A2
ClinGenSLC31A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1318
Chemical/Pharm GKB GenePA35886
Clinical trialSLC31A2
Miscellaneous
canSAR (ICR)SLC31A2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC31A2
EVEXSLC31A2
GoPubMedSLC31A2
iHOPSLC31A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:19:44 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.