Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC34A1 (solute carrier family 34 member 1)

Identity

Alias_namesNPT2
SLC17A2
solute carrier family 34 (sodium phosphate), member 1
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1
Alias_symbol (synonym)NAPI-3
NPTIIa
SLC11
Other aliasFRTS2
HCINF2
NPHLOP1
HGNC (Hugo) SLC34A1
LocusID (NCBI) 6569
Atlas_Id 73395
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 177384431 and ends at 177390513 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC34A1   11019
Cards
Entrez_Gene (NCBI)SLC34A1  6569  solute carrier family 34 member 1
AliasesFRTS2; HCINF2; NAPI-3; NPHLOP1; 
NPT2; NPTIIa; SLC11; SLC17A2
GeneCards (Weizmann)SLC34A1
Ensembl hg19 (Hinxton)ENSG00000131183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131183 [Gene_View]  chr5:177384431-177390513 [Contig_View]  SLC34A1 [Vega]
ICGC DataPortalENSG00000131183
TCGA cBioPortalSLC34A1
AceView (NCBI)SLC34A1
Genatlas (Paris)SLC34A1
WikiGenes6569
SOURCE (Princeton)SLC34A1
Genetics Home Reference (NIH)SLC34A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC34A1  -     chr5:177384431-177390513 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC34A1  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblSLC34A1 - 5q35.3 [CytoView hg19]  SLC34A1 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBISLC34A1 [Mapview hg19]  SLC34A1 [Mapview hg38]
OMIM182309   612286   613388   616963   
Gene and transcription
Genbank (Entrez)AI650347 AK096088 AK298299 BC034756 BC035294
RefSeq transcript (Entrez)NM_001167579 NM_003052
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC34A1
Cluster EST : UnigeneHs.936 [ NCBI ]
CGAP (NCI)Hs.936
Alternative Splicing GalleryENSG00000131183
Gene ExpressionSLC34A1 [ NCBI-GEO ]   SLC34A1 [ EBI - ARRAY_EXPRESS ]   SLC34A1 [ SEEK ]   SLC34A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC34A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6569
GTEX Portal (Tissue expression)SLC34A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ06495   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ06495  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ06495
Splice isoforms : SwissVarQ06495
PhosPhoSitePlusQ06495
Domains : Interpro (EBI)Na/Pi_transpt    Na/Pi_transpt_2A   
Domain families : Pfam (Sanger)Na_Pi_cotrans (PF02690)   
Domain families : Pfam (NCBI)pfam02690   
Conserved Domain (NCBI)SLC34A1
DMDM Disease mutations6569
Blocks (Seattle)SLC34A1
SuperfamilyQ06495
Human Protein AtlasENSG00000131183
Peptide AtlasQ06495
HPRD08918
IPIIPI00031050   IPI00922757   IPI00964760   
Protein Interaction databases
DIP (DOE-UCLA)Q06495
IntAct (EBI)Q06495
FunCoupENSG00000131183
BioGRIDSLC34A1
STRING (EMBL)SLC34A1
ZODIACSLC34A1
Ontologies - Pathways
QuickGOQ06495
Ontology : AmiGOossification  kidney development  sodium:phosphate symporter activity  protein binding  cytoplasm  endosome  plasma membrane  plasma membrane  integral component of plasma membrane  brush border  phosphate ion transport  glycoprotein metabolic process  cell surface  response to lead ion  sodium-dependent phosphate transmembrane transporter activity  sodium-dependent phosphate transmembrane transporter activity  sodium-dependent phosphate transmembrane transporter activity  apical plasma membrane  apical plasma membrane  PDZ domain binding  cellular phosphate ion homeostasis  brush border membrane  brush border membrane  vesicle  response to magnesium ion  response to estradiol  protein complex binding  response to vitamin A  phosphate ion transmembrane transport  sodium ion transmembrane transport  response to potassium ion  indole metabolic process  response to drug  protein homodimerization activity  cellular protein metabolic process  sodium-dependent phosphate transport  membrane raft  positive regulation of membrane potential  response to cadmium ion  response to mercury ion  perinuclear region of cytoplasm  protein homooligomerization  phosphate ion homeostasis  response to growth hormone  cellular response to metal ion  cellular response to parathyroid hormone stimulus  tricarboxylic acid metabolic process  cellular response to staurosporine  response to thyroid hormone  dentinogenesis  gentamycin metabolic process  arsenate ion transmembrane transport  positive regulation of sodium-dependent phosphate transport  positive regulation of phosphate transmembrane transport  
Ontology : EGO-EBIossification  kidney development  sodium:phosphate symporter activity  protein binding  cytoplasm  endosome  plasma membrane  plasma membrane  integral component of plasma membrane  brush border  phosphate ion transport  glycoprotein metabolic process  cell surface  response to lead ion  sodium-dependent phosphate transmembrane transporter activity  sodium-dependent phosphate transmembrane transporter activity  sodium-dependent phosphate transmembrane transporter activity  apical plasma membrane  apical plasma membrane  PDZ domain binding  cellular phosphate ion homeostasis  brush border membrane  brush border membrane  vesicle  response to magnesium ion  response to estradiol  protein complex binding  response to vitamin A  phosphate ion transmembrane transport  sodium ion transmembrane transport  response to potassium ion  indole metabolic process  response to drug  protein homodimerization activity  cellular protein metabolic process  sodium-dependent phosphate transport  membrane raft  positive regulation of membrane potential  response to cadmium ion  response to mercury ion  perinuclear region of cytoplasm  protein homooligomerization  phosphate ion homeostasis  response to growth hormone  cellular response to metal ion  cellular response to parathyroid hormone stimulus  tricarboxylic acid metabolic process  cellular response to staurosporine  response to thyroid hormone  dentinogenesis  gentamycin metabolic process  arsenate ion transmembrane transport  positive regulation of sodium-dependent phosphate transport  positive regulation of phosphate transmembrane transport  
NDEx NetworkSLC34A1
Atlas of Cancer Signalling NetworkSLC34A1
Wikipedia pathwaysSLC34A1
Orthology - Evolution
OrthoDB6569
GeneTree (enSembl)ENSG00000131183
Phylogenetic Trees/Animal Genes : TreeFamSLC34A1
HOVERGENQ06495
HOGENOMQ06495
Homologs : HomoloGeneSLC34A1
Homology/Alignments : Family Browser (UCSC)SLC34A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC34A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC34A1
dbVarSLC34A1
ClinVarSLC34A1
1000_GenomesSLC34A1 
Exome Variant ServerSLC34A1
ExAC (Exome Aggregation Consortium)SLC34A1 (select the gene name)
Genetic variants : HAPMAP6569
Genomic Variants (DGV)SLC34A1 [DGVbeta]
DECIPHERSLC34A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC34A1 
Mutations
ICGC Data PortalSLC34A1 
TCGA Data PortalSLC34A1 
Broad Tumor PortalSLC34A1
OASIS PortalSLC34A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC34A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC34A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC34A1
DgiDB (Drug Gene Interaction Database)SLC34A1
DoCM (Curated mutations)SLC34A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC34A1 (select a term)
intoGenSLC34A1
Cancer3DSLC34A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182309    612286    613388    616963   
Orphanet19477    3727    21128   
MedgenSLC34A1
Genetic Testing Registry SLC34A1
NextProtQ06495 [Medical]
TSGene6569
GENETestsSLC34A1
Target ValidationSLC34A1
Huge Navigator SLC34A1 [HugePedia]
snp3D : Map Gene to Disease6569
BioCentury BCIQSLC34A1
ClinGenSLC34A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6569
Chemical/Pharm GKB GenePA35887
Clinical trialSLC34A1
Miscellaneous
canSAR (ICR)SLC34A1 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC34A1
EVEXSLC34A1
GoPubMedSLC34A1
iHOPSLC34A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:08 CEST 2017

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