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SLC34A3 (solute carrier family 34 (type II sodium/phosphate cotransporter), member 3)

Identity

Alias_namessolute carrier family 34 (sodium phosphate), member 3
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3
Alias_symbol (synonym)NPTIIc
FLJ38680
Other aliasHHRH
HGNC (Hugo) SLC34A3
LocusID (NCBI) 142680
Atlas_Id 73396
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 140125209 and ends at 140131006 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC34A3 (9q34.3) / SEPT9 (17q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC34A3   20305
Cards
Entrez_Gene (NCBI)SLC34A3  142680  solute carrier family 34 (type II sodium/phosphate cotransporter), member 3
AliasesHHRH; NPTIIc
GeneCards (Weizmann)SLC34A3
Ensembl hg19 (Hinxton)ENSG00000198569 [Gene_View]  chr9:140125209-140131006 [Contig_View]  SLC34A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198569 [Gene_View]  chr9:140125209-140131006 [Contig_View]  SLC34A3 [Vega]
ICGC DataPortalENSG00000198569
TCGA cBioPortalSLC34A3
AceView (NCBI)SLC34A3
Genatlas (Paris)SLC34A3
WikiGenes142680
SOURCE (Princeton)SLC34A3
Genetics Home Reference (NIH)SLC34A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC34A3  -     chr9:140125209-140131006 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC34A3  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblSLC34A3 - 9q34.3 [CytoView hg19]  SLC34A3 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBISLC34A3 [Mapview hg19]  SLC34A3 [Mapview hg38]
OMIM241530   609826   
Gene and transcription
Genbank (Entrez)AB055000 AK095999 AL832449 BC029942 BC172399
RefSeq transcript (Entrez)NM_001177316 NM_001177317 NM_080877
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_017008 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)SLC34A3
Cluster EST : UnigeneHs.432442 [ NCBI ]
CGAP (NCI)Hs.432442
Alternative Splicing GalleryENSG00000198569
Gene ExpressionSLC34A3 [ NCBI-GEO ]   SLC34A3 [ EBI - ARRAY_EXPRESS ]   SLC34A3 [ SEEK ]   SLC34A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC34A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142680
GTEX Portal (Tissue expression)SLC34A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N130   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N130  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N130
Splice isoforms : SwissVarQ8N130
PhosPhoSitePlusQ8N130
Domains : Interpro (EBI)Na/Pi_transpt    Na/Pi_transpt_2C   
Domain families : Pfam (Sanger)Na_Pi_cotrans (PF02690)   
Domain families : Pfam (NCBI)pfam02690   
Conserved Domain (NCBI)SLC34A3
DMDM Disease mutations142680
Blocks (Seattle)SLC34A3
SuperfamilyQ8N130
Human Protein AtlasENSG00000198569
Peptide AtlasQ8N130
HPRD10236
IPIIPI00166053   
Protein Interaction databases
DIP (DOE-UCLA)Q8N130
IntAct (EBI)Q8N130
FunCoupENSG00000198569
BioGRIDSLC34A3
STRING (EMBL)SLC34A3
ZODIACSLC34A3
Ontologies - Pathways
QuickGOQ8N130
Ontology : AmiGOsodium:phosphate symporter activity  plasma membrane  ion transport  sodium ion transport  phosphate ion transport  sodium-dependent phosphate transmembrane transporter activity  integral component of membrane  apical plasma membrane  cellular phosphate ion homeostasis  brush border membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  sodium-dependent phosphate transport  transmembrane transport  
Ontology : EGO-EBIsodium:phosphate symporter activity  plasma membrane  ion transport  sodium ion transport  phosphate ion transport  sodium-dependent phosphate transmembrane transporter activity  integral component of membrane  apical plasma membrane  cellular phosphate ion homeostasis  brush border membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  sodium-dependent phosphate transport  transmembrane transport  
NDEx NetworkSLC34A3
Atlas of Cancer Signalling NetworkSLC34A3
Wikipedia pathwaysSLC34A3
Orthology - Evolution
OrthoDB142680
GeneTree (enSembl)ENSG00000198569
Phylogenetic Trees/Animal Genes : TreeFamSLC34A3
HOVERGENQ8N130
HOGENOMQ8N130
Homologs : HomoloGeneSLC34A3
Homology/Alignments : Family Browser (UCSC)SLC34A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC34A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC34A3
dbVarSLC34A3
ClinVarSLC34A3
1000_GenomesSLC34A3 
Exome Variant ServerSLC34A3
ExAC (Exome Aggregation Consortium)SLC34A3 (select the gene name)
Genetic variants : HAPMAP142680
Genomic Variants (DGV)SLC34A3 [DGVbeta]
DECIPHER (Syndromes)9:140125209-140131006  ENSG00000198569
CONAN: Copy Number AnalysisSLC34A3 
Mutations
ICGC Data PortalSLC34A3 
TCGA Data PortalSLC34A3 
Broad Tumor PortalSLC34A3
OASIS PortalSLC34A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC34A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC34A3
LOVD (Leiden Open Variation Database)LOVD - Munich Open Variation Database
BioMutasearch SLC34A3
DgiDB (Drug Gene Interaction Database)SLC34A3
DoCM (Curated mutations)SLC34A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC34A3 (select a term)
intoGenSLC34A3
Cancer3DSLC34A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM241530    609826   
Orphanet17137   
MedgenSLC34A3
Genetic Testing Registry SLC34A3
NextProtQ8N130 [Medical]
TSGene142680
GENETestsSLC34A3
Huge Navigator SLC34A3 [HugePedia]
snp3D : Map Gene to Disease142680
BioCentury BCIQSLC34A3
ClinGenSLC34A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD142680
Chemical/Pharm GKB GenePA134930298
Clinical trialSLC34A3
Miscellaneous
canSAR (ICR)SLC34A3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC34A3
EVEXSLC34A3
GoPubMedSLC34A3
iHOPSLC34A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:39 CET 2017

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