Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC35A1 (solute carrier family 35 member A1)

Identity

Alias (NCBI)CDG2F
CMPST
CST
hCST
HGNC (Hugo) SLC35A1
HGNC Alias symbCMPST
hCST
HGNC Previous namesolute carrier family 35 (UDP-galactose transporter), member 1
 solute carrier family 35 (CMP-sialic acid transporter), member A1
LocusID (NCBI) 10559
Atlas_Id 73397
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 87472925 and ends at 87512339 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCL11A (2p16.1) / SLC35A1 (6q15)SENP6 (6q14.1) / SLC35A1 (6q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q14;q15) SENP6/SLC35A1


External links

Nomenclature
HGNC (Hugo)SLC35A1   11021
Cards
Entrez_Gene (NCBI)SLC35A1  10559  solute carrier family 35 member A1
AliasesCDG2F; CMPST; CST; hCST
GeneCards (Weizmann)SLC35A1
Ensembl hg19 (Hinxton)ENSG00000164414 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164414 [Gene_View]  ENSG00000164414 [Sequence]  chr6:87472925-87512339 [Contig_View]  SLC35A1 [Vega]
ICGC DataPortalENSG00000164414
TCGA cBioPortalSLC35A1
AceView (NCBI)SLC35A1
Genatlas (Paris)SLC35A1
WikiGenes10559
SOURCE (Princeton)SLC35A1
Genetics Home Reference (NIH)SLC35A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35A1  -     chr6:87472925-87512339 +  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35A1  -     6q15   [Description]    (hg19-Feb_2009)
GoldenPathSLC35A1 - 6q15 [CytoView hg19]  SLC35A1 - 6q15 [CytoView hg38]
ImmunoBaseENSG00000164414
genome Data Viewer NCBISLC35A1 [Mapview hg19]  
OMIM603585   605634   
Gene and transcription
Genbank (Entrez)AJ810302 AJ810303 AJ851888 AJ851889 AJ851890
RefSeq transcript (Entrez)NM_001168398 NM_006416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35A1
Alternative Splicing GalleryENSG00000164414
Gene ExpressionSLC35A1 [ NCBI-GEO ]   SLC35A1 [ EBI - ARRAY_EXPRESS ]   SLC35A1 [ SEEK ]   SLC35A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35A1 [ Firebrowse - Broad ]
GenevisibleExpression of SLC35A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10559
GTEX Portal (Tissue expression)SLC35A1
Human Protein AtlasENSG00000164414-SLC35A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78382   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78382  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78382
Splice isoforms : SwissVarP78382
PhosPhoSitePlusP78382
Domains : Interpro (EBI)Nuc_sug_transpt   
Domain families : Pfam (Sanger)Nuc_sug_transp (PF04142)   
Domain families : Pfam (NCBI)pfam04142   
Conserved Domain (NCBI)SLC35A1
DMDM Disease mutations10559
Blocks (Seattle)SLC35A1
SuperfamilyP78382
Human Protein Atlas [tissue]ENSG00000164414-SLC35A1 [tissue]
Peptide AtlasP78382
HPRD09290
IPIIPI00746093   IPI01009968   IPI00909593   IPI00470417   IPI00877077   IPI00843912   IPI01018927   IPI00478254   
Protein Interaction databases
DIP (DOE-UCLA)P78382
IntAct (EBI)P78382
FunCoupENSG00000164414
BioGRIDSLC35A1
STRING (EMBL)SLC35A1
ZODIACSLC35A1
Ontologies - Pathways
QuickGOP78382
Ontology : AmiGOGolgi membrane  CMP-N-acetylneuraminate transmembrane transporter activity  CMP-N-acetylneuraminate transmembrane transporter activity  UDP-galactose transmembrane transporter activity  Golgi apparatus  integral component of plasma membrane  carbohydrate metabolic process  cellular protein modification process  carbohydrate transport  antiporter activity  CMP-N-acetylneuraminate transmembrane transport  integral component of membrane  integral component of Golgi membrane  UDP-galactose transmembrane transport  
Ontology : EGO-EBIGolgi membrane  CMP-N-acetylneuraminate transmembrane transporter activity  CMP-N-acetylneuraminate transmembrane transporter activity  UDP-galactose transmembrane transporter activity  Golgi apparatus  integral component of plasma membrane  carbohydrate metabolic process  cellular protein modification process  carbohydrate transport  antiporter activity  CMP-N-acetylneuraminate transmembrane transport  integral component of membrane  integral component of Golgi membrane  UDP-galactose transmembrane transport  
NDEx NetworkSLC35A1
Atlas of Cancer Signalling NetworkSLC35A1
Wikipedia pathwaysSLC35A1
Orthology - Evolution
OrthoDB10559
GeneTree (enSembl)ENSG00000164414
Phylogenetic Trees/Animal Genes : TreeFamSLC35A1
HOGENOMP78382
Homologs : HomoloGeneSLC35A1
Homology/Alignments : Family Browser (UCSC)SLC35A1
Gene fusions - Rearrangements
Fusion : QuiverSLC35A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35A1
dbVarSLC35A1
ClinVarSLC35A1
1000_GenomesSLC35A1 
Exome Variant ServerSLC35A1
GNOMAD BrowserENSG00000164414
Varsome BrowserSLC35A1
Genetic variants : HAPMAP10559
Genomic Variants (DGV)SLC35A1 [DGVbeta]
DECIPHERSLC35A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35A1 
Mutations
ICGC Data PortalSLC35A1 
TCGA Data PortalSLC35A1 
Broad Tumor PortalSLC35A1
OASIS PortalSLC35A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC35A1
Mutations and Diseases : HGMDSLC35A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC35A1
DgiDB (Drug Gene Interaction Database)SLC35A1
DoCM (Curated mutations)SLC35A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35A1 (select a term)
intoGenSLC35A1
Cancer3DSLC35A1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603585    605634   
Orphanet19265   
DisGeNETSLC35A1
MedgenSLC35A1
Genetic Testing Registry SLC35A1
NextProtP78382 [Medical]
TSGene10559
GENETestsSLC35A1
Target ValidationSLC35A1
Huge Navigator SLC35A1 [HugePedia]
snp3D : Map Gene to Disease10559
BioCentury BCIQSLC35A1
ClinGenSLC35A1
Clinical trials, drugs, therapy
Protein Interactions : CTD10559
Pharm GKB GenePA35889
Clinical trialSLC35A1
Miscellaneous
canSAR (ICR)SLC35A1 (select the gene name)
HarmonizomeSLC35A1
DataMed IndexSLC35A1
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35A1
EVEXSLC35A1
GoPubMedSLC35A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Aug 22 19:34:37 CEST 2020

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