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SLC35A2 (solute carrier family 35 member A2)

Identity

Alias_namesUGALT
solute carrier family 35 (UDP-galactose transporter), member 2
solute carrier family 35 (UDP-galactose transporter), member A2
Alias_symbol (synonym)UGAT
UGT
UGT1
UGT2
UGTL
Other aliasCDG2M
CDGX
UDP-Gal-Tr
HGNC (Hugo) SLC35A2
LocusID (NCBI) 7355
Atlas_Id 73398
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48903612 and ends at 48911958 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HSPA9 (5q31.2) / SLC35A2 (Xp11.23)TMEM107 (17p13.1) / SLC35A2 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35A2   11022
Cards
Entrez_Gene (NCBI)SLC35A2  7355  solute carrier family 35 member A2
AliasesCDG2M; CDGX; UDP-Gal-Tr; UGALT; 
UGAT; UGT; UGT1; UGT2; UGTL
GeneCards (Weizmann)SLC35A2
Ensembl hg19 (Hinxton)ENSG00000102100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102100 [Gene_View]  chrX:48903612-48911958 [Contig_View]  SLC35A2 [Vega]
ICGC DataPortalENSG00000102100
TCGA cBioPortalSLC35A2
AceView (NCBI)SLC35A2
Genatlas (Paris)SLC35A2
WikiGenes7355
SOURCE (Princeton)SLC35A2
Genetics Home Reference (NIH)SLC35A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35A2  -     chrX:48903612-48911958 -  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35A2  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblSLC35A2 - Xp11.23 [CytoView hg19]  SLC35A2 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISLC35A2 [Mapview hg19]  SLC35A2 [Mapview hg38]
OMIM300896   314375   
Gene and transcription
Genbank (Entrez)AI632201 AK090730 AK225508 AK290284 AK292816
RefSeq transcript (Entrez)NM_001032289 NM_001042498 NM_001282647 NM_001282648 NM_001282649 NM_001282650 NM_001282651 NM_005660
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35A2
Cluster EST : UnigeneHs.21899 [ NCBI ]
CGAP (NCI)Hs.21899
Alternative Splicing GalleryENSG00000102100
Gene ExpressionSLC35A2 [ NCBI-GEO ]   SLC35A2 [ EBI - ARRAY_EXPRESS ]   SLC35A2 [ SEEK ]   SLC35A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7355
GTEX Portal (Tissue expression)SLC35A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78381   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78381  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78381
Splice isoforms : SwissVarP78381
PhosPhoSitePlusP78381
Domains : Interpro (EBI)Nuc_sug_transpt   
Domain families : Pfam (Sanger)Nuc_sug_transp (PF04142)   
Domain families : Pfam (NCBI)pfam04142   
Conserved Domain (NCBI)SLC35A2
DMDM Disease mutations7355
Blocks (Seattle)SLC35A2
SuperfamilyP78381
Human Protein AtlasENSG00000102100
Peptide AtlasP78381
HPRD02441
IPIIPI00019254   IPI00218562   IPI00908930   IPI00909959   IPI00644304   IPI00645453   IPI00383382   IPI00645862   IPI00645311   IPI00644902   
Protein Interaction databases
DIP (DOE-UCLA)P78381
IntAct (EBI)P78381
FunCoupENSG00000102100
BioGRIDSLC35A2
STRING (EMBL)SLC35A2
ZODIACSLC35A2
Ontologies - Pathways
QuickGOP78381
Ontology : AmiGOGolgi membrane  sugar:proton symporter activity  UDP-galactose transmembrane transporter activity  nucleus  endoplasmic reticulum  Golgi apparatus  galactose metabolic process  UDP-galactose transport  proton transport  integral component of membrane  UDP-galactose transmembrane transport  
Ontology : EGO-EBIGolgi membrane  sugar:proton symporter activity  UDP-galactose transmembrane transporter activity  nucleus  endoplasmic reticulum  Golgi apparatus  galactose metabolic process  UDP-galactose transport  proton transport  integral component of membrane  UDP-galactose transmembrane transport  
NDEx NetworkSLC35A2
Atlas of Cancer Signalling NetworkSLC35A2
Wikipedia pathwaysSLC35A2
Orthology - Evolution
OrthoDB7355
GeneTree (enSembl)ENSG00000102100
Phylogenetic Trees/Animal Genes : TreeFamSLC35A2
HOVERGENP78381
HOGENOMP78381
Homologs : HomoloGeneSLC35A2
Homology/Alignments : Family Browser (UCSC)SLC35A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35A2
dbVarSLC35A2
ClinVarSLC35A2
1000_GenomesSLC35A2 
Exome Variant ServerSLC35A2
ExAC (Exome Aggregation Consortium)SLC35A2 (select the gene name)
Genetic variants : HAPMAP7355
Genomic Variants (DGV)SLC35A2 [DGVbeta]
DECIPHERSLC35A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35A2 
Mutations
ICGC Data PortalSLC35A2 
TCGA Data PortalSLC35A2 
Broad Tumor PortalSLC35A2
OASIS PortalSLC35A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35A2
DgiDB (Drug Gene Interaction Database)SLC35A2
DoCM (Curated mutations)SLC35A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35A2 (select a term)
intoGenSLC35A2
Cancer3DSLC35A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300896    314375   
Orphanet22189   
MedgenSLC35A2
Genetic Testing Registry SLC35A2
NextProtP78381 [Medical]
TSGene7355
GENETestsSLC35A2
Target ValidationSLC35A2
Huge Navigator SLC35A2 [HugePedia]
snp3D : Map Gene to Disease7355
BioCentury BCIQSLC35A2
ClinGenSLC35A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7355
Chemical/Pharm GKB GenePA35890
Clinical trialSLC35A2
Miscellaneous
canSAR (ICR)SLC35A2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35A2
EVEXSLC35A2
GoPubMedSLC35A2
iHOPSLC35A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:38:54 CEST 2017

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