Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC35A3 (solute carrier family 35 member A3)

Identity


Alias_namessolute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3
Other aliasAMRS
HGNC (Hugo)=A(HREF=http://www.genenames.org/data/hgnc_data.php?hgnc_id=11023 TARGET=HUGO>SLC35A3
LocusID (NCBI) 23443
Atlas_Id 73399
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 99969789 and ends at 100026978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC35A3 (1p21.2) / MFSD14A (1p21.2)SLC35A3 (1p21.2) / SFI1 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35A3   11023
Cards
Entrez_Gene (NCBI)SLC35A3  23443  solute carrier family 35 member A3
AliasesAMRS
GeneCards (Weizmann)SLC35A3
Ensembl hg19 (Hinxton)ENSG00000117620 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117620 [Gene_View]  chr1:99969789-100026978 [Contig_View]  SLC35A3 [Vega]
ICGC DataPortalENSG00000117620
TCGA cBioPortalSLC35A3
AceView (NCBI)SLC35A3
Genatlas (Paris)SLC35A3
WikiGenes23443
SOURCE (Princeton)SLC35A3
Genetics Home Reference (NIH)SLC35A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35A3  -     chr1:99969789-100026978 +  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35A3  -     1p21.2   [Description]    (hg19-Feb_2009)
EnsemblSLC35A3 - 1p21.2 [CytoView hg19]  SLC35A3 - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBISLC35A3 [Mapview hg19]  SLC35A3 [Mapview hg38]
OMIM605632   615553   
Gene and transcription
Genbank (Entrez)AB021981 AK024989 AK290573 AV698459 BC005136
RefSeq transcript (Entrez)NM_001271684 NM_001271685 NM_012243
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35A3
Cluster EST : UnigeneHs.534953 [ NCBI ]
CGAP (NCI)Hs.534953
Alternative Splicing GalleryENSG00000117620
Gene ExpressionSLC35A3 [ NCBI-GEO ]   SLC35A3 [ EBI - ARRAY_EXPRESS ]   SLC35A3 [ SEEK ]   SLC35A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23443
GTEX Portal (Tissue expression)SLC35A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2D2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2D2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2D2
Splice isoforms : SwissVarQ9Y2D2
PhosPhoSitePlusQ9Y2D2
Domains : Interpro (EBI)Nuc_sug_transpt   
Domain families : Pfam (Sanger)Nuc_sug_transp (PF04142)   
Domain families : Pfam (NCBI)pfam04142   
Conserved Domain (NCBI)SLC35A3
DMDM Disease mutations23443
Blocks (Seattle)SLC35A3
SuperfamilyQ9Y2D2
Human Protein AtlasENSG00000117620
Peptide AtlasQ9Y2D2
HPRD10413
IPIIPI00470810   IPI00643443   IPI00553189   IPI01011468   IPI00647879   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2D2
IntAct (EBI)Q9Y2D2
FunCoupENSG00000117620
BioGRIDSLC35A3
STRING (EMBL)SLC35A3
ZODIACSLC35A3
Ontologies - Pathways
QuickGOQ9Y2D2
Ontology : AmiGOGolgi membrane  sugar:proton symporter activity  UDP-N-acetylglucosamine transmembrane transporter activity  protein binding  Golgi apparatus  UDP-N-acetylglucosamine metabolic process  carbohydrate transport  UDP-N-acetylglucosamine transport  proton transport  integral component of membrane  UDP-N-acetylglucosamine transmembrane transport  
Ontology : EGO-EBIGolgi membrane  sugar:proton symporter activity  UDP-N-acetylglucosamine transmembrane transporter activity  protein binding  Golgi apparatus  UDP-N-acetylglucosamine metabolic process  carbohydrate transport  UDP-N-acetylglucosamine transport  proton transport  integral component of membrane  UDP-N-acetylglucosamine transmembrane transport  
NDEx NetworkSLC35A3
Atlas of Cancer Signalling NetworkSLC35A3
Wikipedia pathwaysSLC35A3
Orthology - Evolution
OrthoDB23443
GeneTree (enSembl)ENSG00000117620
Phylogenetic Trees/Animal Genes : TreeFamSLC35A3
HOVERGENQ9Y2D2
HOGENOMQ9Y2D2
Homologs : HomoloGeneSLC35A3
Homology/Alignments : Family Browser (UCSC)SLC35A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35A3
dbVarSLC35A3
ClinVarSLC35A3
1000_GenomesSLC35A3 
Exome Variant ServerSLC35A3
ExAC (Exome Aggregation Consortium)SLC35A3 (select the gene name)
Genetic variants : HAPMAP23443
Genomic Variants (DGV)SLC35A3 [DGVbeta]
DECIPHERSLC35A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35A3 
Mutations
ICGC Data PortalSLC35A3 
TCGA Data PortalSLC35A3 
Broad Tumor PortalSLC35A3
OASIS PortalSLC35A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOD 3. siared installation
BioMutasearch SLC35A3
DgiDB (Drug Gene Interaction Database)SLC35A3
DoCM (Curated mutations)SLC35A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35A3 (select a term)
intoGenSLC35A3
Cancer3DSLC35A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605632    615553   
Orphanet22507   
MedgenSLC35A3
Genetic Testing Registry SLC35A3
NextProtQ9Y2D2 [Medical]
TSGene23443
GENETestsSLC35A3
Target ValidationSLC35A3
Huge Navigator SLC35A3 [HugePedia]
snp3D : Map Gene to Disease23443
BioCentury BCIQSLC35A3
ClinGenSLC35A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23443
Chemical/Pharm GKB GenePA35891
Clinical trialSLC35A3
Miscellaneous
canSAR (ICR)SLC35A3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35A3
EVEXSLC35A3
GoPubMedSLC35A3
iHOPSLC35A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.