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SLC35A4 (solute carrier family 35, member A4)

Identity

Alias_namessolute carrier family 35, member A4
Other alias-
HGNC (Hugo) SLC35A4
LocusID (NCBI) 113829
Atlas_Id 73400
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 139944150 and ends at 139948689 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC35A4 (5q31.3) / NUMA1 (11q13.4)SLC35A4 (5q31.3) / SLC35A4 (5q31.3)TMBIM6 (12q13.12) / SLC35A4 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35A4   20753
Cards
Entrez_Gene (NCBI)SLC35A4  113829  solute carrier family 35, member A4
Aliases
GeneCards (Weizmann)SLC35A4
Ensembl hg19 (Hinxton)ENSG00000176087 [Gene_View]  chr5:139944150-139948689 [Contig_View]  SLC35A4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176087 [Gene_View]  chr5:139944150-139948689 [Contig_View]  SLC35A4 [Vega]
ICGC DataPortalENSG00000176087
TCGA cBioPortalSLC35A4
AceView (NCBI)SLC35A4
Genatlas (Paris)SLC35A4
WikiGenes113829
SOURCE (Princeton)SLC35A4
Genetics Home Reference (NIH)SLC35A4
Genomic and cartography
GoldenPath hg19 (UCSC)SLC35A4  -     chr5:139944150-139948689 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC35A4  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblSLC35A4 - 5q31.3 [CytoView hg19]  SLC35A4 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBISLC35A4 [Mapview hg19]  SLC35A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF445025 AJ420598 AK122601 AK289378 AK307282
RefSeq transcript (Entrez)NM_080670
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)SLC35A4
Cluster EST : UnigeneHs.406840 [ NCBI ]
CGAP (NCI)Hs.406840
Alternative Splicing GalleryENSG00000176087
Gene ExpressionSLC35A4 [ NCBI-GEO ]   SLC35A4 [ EBI - ARRAY_EXPRESS ]   SLC35A4 [ SEEK ]   SLC35A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113829
GTEX Portal (Tissue expression)SLC35A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96G79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96G79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96G79
Splice isoforms : SwissVarQ96G79
PhosPhoSitePlusQ96G79
Domains : Interpro (EBI)Nuc_sug_transpt    UDP/CMP-sugar_transptr   
Domain families : Pfam (Sanger)Nuc_sug_transp (PF04142)   
Domain families : Pfam (NCBI)pfam04142   
Conserved Domain (NCBI)SLC35A4
DMDM Disease mutations113829
Blocks (Seattle)SLC35A4
SuperfamilyQ96G79
Human Protein AtlasENSG00000176087
Peptide AtlasQ96G79
HPRD11574
IPIIPI00062325   IPI00446858   IPI00383265   
Protein Interaction databases
DIP (DOE-UCLA)Q96G79
IntAct (EBI)Q96G79
FunCoupENSG00000176087
BioGRIDSLC35A4
STRING (EMBL)SLC35A4
ZODIACSLC35A4
Ontologies - Pathways
QuickGOQ96G79
Ontology : AmiGOGolgi membrane  sugar:proton symporter activity  carbohydrate transport  proton transport  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  sugar:proton symporter activity  carbohydrate transport  proton transport  integral component of membrane  
NDEx NetworkSLC35A4
Atlas of Cancer Signalling NetworkSLC35A4
Wikipedia pathwaysSLC35A4
Orthology - Evolution
OrthoDB113829
GeneTree (enSembl)ENSG00000176087
Phylogenetic Trees/Animal Genes : TreeFamSLC35A4
HOVERGENQ96G79
HOGENOMQ96G79
Homologs : HomoloGeneSLC35A4
Homology/Alignments : Family Browser (UCSC)SLC35A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35A4
dbVarSLC35A4
ClinVarSLC35A4
1000_GenomesSLC35A4 
Exome Variant ServerSLC35A4
ExAC (Exome Aggregation Consortium)SLC35A4 (select the gene name)
Genetic variants : HAPMAP113829
Genomic Variants (DGV)SLC35A4 [DGVbeta]
DECIPHER (Syndromes)5:139944150-139948689  ENSG00000176087
CONAN: Copy Number AnalysisSLC35A4 
Mutations
ICGC Data PortalSLC35A4 
TCGA Data PortalSLC35A4 
Broad Tumor PortalSLC35A4
OASIS PortalSLC35A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35A4
DgiDB (Drug Gene Interaction Database)SLC35A4
DoCM (Curated mutations)SLC35A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35A4 (select a term)
intoGenSLC35A4
Cancer3DSLC35A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35A4
Genetic Testing Registry SLC35A4
NextProtQ96G79 [Medical]
TSGene113829
GENETestsSLC35A4
Huge Navigator SLC35A4 [HugePedia]
snp3D : Map Gene to Disease113829
BioCentury BCIQSLC35A4
ClinGenSLC35A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113829
Chemical/Pharm GKB GenePA134971555
Clinical trialSLC35A4
Miscellaneous
canSAR (ICR)SLC35A4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35A4
EVEXSLC35A4
GoPubMedSLC35A4
iHOPSLC35A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:40 CET 2017

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