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SLC35A5 (solute carrier family 35 member A5)

Identity

Alias_namessolute carrier family 35, member A5
Alias_symbol (synonym)FLJ20730
Other alias-
HGNC (Hugo) SLC35A5
LocusID (NCBI) 55032
Atlas_Id 73401
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112561680 and ends at 112585577 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC35A5 (3q13.2) / SLC35A5 (3q13.2)STRBP (9q33.3) / SLC35A5 (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35A5   20792
Cards
Entrez_Gene (NCBI)SLC35A5  55032  solute carrier family 35 member A5
Aliases
GeneCards (Weizmann)SLC35A5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:112561680-112585577 [Contig_View]  SLC35A5 [Vega]
TCGA cBioPortalSLC35A5
AceView (NCBI)SLC35A5
Genatlas (Paris)SLC35A5
WikiGenes55032
SOURCE (Princeton)SLC35A5
Genetics Home Reference (NIH)SLC35A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35A5  -     chr3:112561680-112585577 +  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35A5  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblSLC35A5 - 3q13.2 [CytoView hg19]  SLC35A5 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBISLC35A5 [Mapview hg19]  SLC35A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075484 AK000737 AK001992 AK098839 AK172825
RefSeq transcript (Entrez)NM_001348905 NM_001348906 NM_001348907 NM_001348908 NM_001348909 NM_001348910 NM_001348911 NM_017945
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35A5
Cluster EST : UnigeneHs.237480 [ NCBI ]
CGAP (NCI)Hs.237480
Gene ExpressionSLC35A5 [ NCBI-GEO ]   SLC35A5 [ EBI - ARRAY_EXPRESS ]   SLC35A5 [ SEEK ]   SLC35A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55032
GTEX Portal (Tissue expression)SLC35A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BS91   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BS91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BS91
Splice isoforms : SwissVarQ9BS91
PhosPhoSitePlusQ9BS91
Domains : Interpro (EBI)Nuc_sug_transpt   
Domain families : Pfam (Sanger)Nuc_sug_transp (PF04142)   
Domain families : Pfam (NCBI)pfam04142   
Conserved Domain (NCBI)SLC35A5
DMDM Disease mutations55032
Blocks (Seattle)SLC35A5
SuperfamilyQ9BS91
Peptide AtlasQ9BS91
HPRD11575
IPIIPI00305218   IPI00947480   IPI00789982   IPI00976940   IPI00946855   
Protein Interaction databases
DIP (DOE-UCLA)Q9BS91
IntAct (EBI)Q9BS91
BioGRIDSLC35A5
STRING (EMBL)SLC35A5
ZODIACSLC35A5
Ontologies - Pathways
QuickGOQ9BS91
Ontology : AmiGOGolgi membrane  sugar:proton symporter activity  carbohydrate transport  proton transport  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  sugar:proton symporter activity  carbohydrate transport  proton transport  integral component of membrane  
NDEx NetworkSLC35A5
Atlas of Cancer Signalling NetworkSLC35A5
Wikipedia pathwaysSLC35A5
Orthology - Evolution
OrthoDB55032
Phylogenetic Trees/Animal Genes : TreeFamSLC35A5
HOVERGENQ9BS91
HOGENOMQ9BS91
Homologs : HomoloGeneSLC35A5
Homology/Alignments : Family Browser (UCSC)SLC35A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35A5
dbVarSLC35A5
ClinVarSLC35A5
1000_GenomesSLC35A5 
Exome Variant ServerSLC35A5
ExAC (Exome Aggregation Consortium)SLC35A5 (select the gene name)
Genetic variants : HAPMAP55032
Genomic Variants (DGV)SLC35A5 [DGVbeta]
DECIPHERSLC35A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35A5 
Mutations
ICGC Data PortalSLC35A5 
TCGA Data PortalSLC35A5 
Broad Tumor PortalSLC35A5
OASIS PortalSLC35A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35A5
DgiDB (Drug Gene Interaction Database)SLC35A5
DoCM (Curated mutations)SLC35A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35A5 (select a term)
intoGenSLC35A5
Cancer3DSLC35A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC35A5
Genetic Testing Registry SLC35A5
NextProtQ9BS91 [Medical]
TSGene55032
GENETestsSLC35A5
Target ValidationSLC35A5
Huge Navigator SLC35A5 [HugePedia]
snp3D : Map Gene to Disease55032
BioCentury BCIQSLC35A5
ClinGenSLC35A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55032
Chemical/Pharm GKB GenePA134947136
Clinical trialSLC35A5
Miscellaneous
canSAR (ICR)SLC35A5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35A5
EVEXSLC35A5
GoPubMedSLC35A5
iHOPSLC35A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:09 CEST 2017

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