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SLC35B1 (solute carrier family 35, member B1)

Identity

Alias_namessolute carrier family 35, member B1
Alias_symbol (synonym)UGTREL1
Other alias
HGNC (Hugo) SLC35B1
LocusID (NCBI) 10237
Atlas_Id 73402
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 47778296 and ends at 47785313 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM117A (17q21.33) / SLC35B1 (17q21.33)PEMT (17p11.2) / SLC35B1 (17q21.33)SLC35B1 (17q21.33) / HNRNPUL1 (19q13.2)
SLC35B1 (17q21.33) / IGFBP4 (17q21.2)SLC35B1 (17q21.33) / PDGFRA (4q12)SLC35B1 (17q21.33) / PMEPA1 (20q13.31)
SLC35B1 (17q21.33) / SLC12A7 (5p15.33)SLC35B1 (17q21.33) / TGIF1 (18p11.31)SPOP (17q21.33) / SLC35B1 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35B1   20798
Cards
Entrez_Gene (NCBI)SLC35B1  10237  solute carrier family 35, member B1
AliasesUGTREL1
GeneCards (Weizmann)SLC35B1
Ensembl hg19 (Hinxton)ENSG00000121073 [Gene_View]  chr17:47778296-47785313 [Contig_View]  SLC35B1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000121073 [Gene_View]  chr17:47778296-47785313 [Contig_View]  SLC35B1 [Vega]
ICGC DataPortalENSG00000121073
TCGA cBioPortalSLC35B1
AceView (NCBI)SLC35B1
Genatlas (Paris)SLC35B1
WikiGenes10237
SOURCE (Princeton)SLC35B1
Genetics Home Reference (NIH)SLC35B1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC35B1  -     chr17:47778296-47785313 -  17q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC35B1  -     17q21.33   [Description]    (hg38-Dec_2013)
EnsemblSLC35B1 - 17q21.33 [CytoView hg19]  SLC35B1 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBISLC35B1 [Mapview hg19]  SLC35B1 [Mapview hg38]
OMIM610790   
Gene and transcription
Genbank (Entrez)AI252816 AK098056 AK124975 AK293563 AK296073
RefSeq transcript (Entrez)NM_001278784 NM_005827
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SLC35B1
Cluster EST : UnigeneHs.154073 [ NCBI ]
CGAP (NCI)Hs.154073
Alternative Splicing GalleryENSG00000121073
Gene ExpressionSLC35B1 [ NCBI-GEO ]   SLC35B1 [ EBI - ARRAY_EXPRESS ]   SLC35B1 [ SEEK ]   SLC35B1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10237
GTEX Portal (Tissue expression)SLC35B1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78383   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78383  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78383
Splice isoforms : SwissVarP78383
PhosPhoSitePlusP78383
Domains : Interpro (EBI)UAA   
Domain families : Pfam (Sanger)UAA (PF08449)   
Domain families : Pfam (NCBI)pfam08449   
Conserved Domain (NCBI)SLC35B1
DMDM Disease mutations10237
Blocks (Seattle)SLC35B1
SuperfamilyP78383
Human Protein AtlasENSG00000121073
Peptide AtlasP78383
HPRD10237
IPIIPI00940994   IPI00025114   IPI00790789   IPI00967002   IPI00910735   IPI00967289   IPI00968295   IPI00967551   IPI01011237   IPI00967496   IPI00964339   IPI00965664   IPI00966752   
Protein Interaction databases
DIP (DOE-UCLA)P78383
IntAct (EBI)P78383
FunCoupENSG00000121073
BioGRIDSLC35B1
STRING (EMBL)SLC35B1
ZODIACSLC35B1
Ontologies - Pathways
QuickGOP78383
Ontology : AmiGOUDP-galactose transmembrane transporter activity  endoplasmic reticulum membrane  transport  integral component of membrane  intracellular membrane-bounded organelle  UDP-galactose transmembrane transport  
Ontology : EGO-EBIUDP-galactose transmembrane transporter activity  endoplasmic reticulum membrane  transport  integral component of membrane  intracellular membrane-bounded organelle  UDP-galactose transmembrane transport  
NDEx NetworkSLC35B1
Atlas of Cancer Signalling NetworkSLC35B1
Wikipedia pathwaysSLC35B1
Orthology - Evolution
OrthoDB10237
GeneTree (enSembl)ENSG00000121073
Phylogenetic Trees/Animal Genes : TreeFamSLC35B1
HOVERGENP78383
HOGENOMP78383
Homologs : HomoloGeneSLC35B1
Homology/Alignments : Family Browser (UCSC)SLC35B1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35B1
dbVarSLC35B1
ClinVarSLC35B1
1000_GenomesSLC35B1 
Exome Variant ServerSLC35B1
ExAC (Exome Aggregation Consortium)SLC35B1 (select the gene name)
Genetic variants : HAPMAP10237
Genomic Variants (DGV)SLC35B1 [DGVbeta]
DECIPHER (Syndromes)17:47778296-47785313  ENSG00000121073
CONAN: Copy Number AnalysisSLC35B1 
Mutations
ICGC Data PortalSLC35B1 
TCGA Data PortalSLC35B1 
Broad Tumor PortalSLC35B1
OASIS PortalSLC35B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35B1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35B1
DgiDB (Drug Gene Interaction Database)SLC35B1
DoCM (Curated mutations)SLC35B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35B1 (select a term)
intoGenSLC35B1
Cancer3DSLC35B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610790   
Orphanet
MedgenSLC35B1
Genetic Testing Registry SLC35B1
NextProtP78383 [Medical]
TSGene10237
GENETestsSLC35B1
Huge Navigator SLC35B1 [HugePedia]
snp3D : Map Gene to Disease10237
BioCentury BCIQSLC35B1
ClinGenSLC35B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10237
Chemical/Pharm GKB GenePA134864001
Clinical trialSLC35B1
Miscellaneous
canSAR (ICR)SLC35B1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35B1
EVEXSLC35B1
GoPubMedSLC35B1
iHOPSLC35B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:40 CET 2017

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