Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC35B2 (solute carrier family 35 member B2)

Identity

Alias_namessolute carrier family 35, member B2
solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
Alias_symbol (synonym)UGTrel4
Other aliasPAPST1
SLL
HGNC (Hugo) SLC35B2
LocusID (NCBI) 347734
Atlas_Id 52238
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 44254101 and ends at 44257571 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PSMD8 (19q13.2) / SLC35B2 (6p21.1)SLC35B2 (6p21.1) / SLC35B2 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35B2   16872
Cards
Entrez_Gene (NCBI)SLC35B2  347734  solute carrier family 35 member B2
AliasesPAPST1; SLL; UGTrel4
GeneCards (Weizmann)SLC35B2
Ensembl hg19 (Hinxton)ENSG00000157593 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157593 [Gene_View]  ENSG00000157593 [Sequence]  chr6:44254101-44257571 [Contig_View]  SLC35B2 [Vega]
ICGC DataPortalENSG00000157593
TCGA cBioPortalSLC35B2
AceView (NCBI)SLC35B2
Genatlas (Paris)SLC35B2
WikiGenes347734
SOURCE (Princeton)SLC35B2
Genetics Home Reference (NIH)SLC35B2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35B2  -     chr6:44254101-44257571 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35B2  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblSLC35B2 - 6p21.1 [CytoView hg19]  SLC35B2 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBISLC35B2 [Mapview hg19]  SLC35B2 [Mapview hg38]
OMIM610788   
Gene and transcription
Genbank (Entrez)AB097021 AB097039 AB106538 AK075456 AK123749
RefSeq transcript (Entrez)NM_001286509 NM_001286510 NM_001286511 NM_001286512 NM_001286513 NM_001286517 NM_001286519 NM_001286520 NM_178148
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35B2
Cluster EST : UnigeneHs.182885 [ NCBI ]
CGAP (NCI)Hs.182885
Alternative Splicing GalleryENSG00000157593
Gene ExpressionSLC35B2 [ NCBI-GEO ]   SLC35B2 [ EBI - ARRAY_EXPRESS ]   SLC35B2 [ SEEK ]   SLC35B2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347734
GTEX Portal (Tissue expression)SLC35B2
Human Protein AtlasENSG00000157593-SLC35B2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB61
Splice isoforms : SwissVarQ8TB61
PhosPhoSitePlusQ8TB61
Domains : Interpro (EBI)UAA   
Domain families : Pfam (Sanger)UAA (PF08449)   
Domain families : Pfam (NCBI)pfam08449   
Conserved Domain (NCBI)SLC35B2
DMDM Disease mutations347734
Blocks (Seattle)SLC35B2
SuperfamilyQ8TB61
Human Protein Atlas [tissue]ENSG00000157593-SLC35B2 [tissue]
Peptide AtlasQ8TB61
HPRD11576
IPIIPI00642271   IPI00384867   IPI00854750   IPI00942871   IPI01011348   IPI01011819   IPI00645299   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB61
IntAct (EBI)Q8TB61
FunCoupENSG00000157593
BioGRIDSLC35B2
STRING (EMBL)SLC35B2
ZODIACSLC35B2
Ontologies - Pathways
QuickGOQ8TB61
Ontology : AmiGOGolgi membrane  Golgi apparatus  membrane  integral component of membrane  integral component of Golgi membrane  integral component of endoplasmic reticulum membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  3'-phosphoadenosine 5'-phosphosulfate transport  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  3'-phospho-5'-adenylyl sulfate transmembrane transport  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  membrane  integral component of membrane  integral component of Golgi membrane  integral component of endoplasmic reticulum membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  3'-phosphoadenosine 5'-phosphosulfate transport  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  3'-phospho-5'-adenylyl sulfate transmembrane transport  
NDEx NetworkSLC35B2
Atlas of Cancer Signalling NetworkSLC35B2
Wikipedia pathwaysSLC35B2
Orthology - Evolution
OrthoDB347734
GeneTree (enSembl)ENSG00000157593
Phylogenetic Trees/Animal Genes : TreeFamSLC35B2
HOVERGENQ8TB61
HOGENOMQ8TB61
Homologs : HomoloGeneSLC35B2
Homology/Alignments : Family Browser (UCSC)SLC35B2
Gene fusions - Rearrangements
Fusion : QuiverSLC35B2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35B2
dbVarSLC35B2
ClinVarSLC35B2
1000_GenomesSLC35B2 
Exome Variant ServerSLC35B2
ExAC (Exome Aggregation Consortium)ENSG00000157593
GNOMAD BrowserENSG00000157593
Varsome BrowserSLC35B2
Genetic variants : HAPMAP347734
Genomic Variants (DGV)SLC35B2 [DGVbeta]
DECIPHERSLC35B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35B2 
Mutations
ICGC Data PortalSLC35B2 
TCGA Data PortalSLC35B2 
Broad Tumor PortalSLC35B2
OASIS PortalSLC35B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35B2
DgiDB (Drug Gene Interaction Database)SLC35B2
DoCM (Curated mutations)SLC35B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35B2 (select a term)
intoGenSLC35B2
Cancer3DSLC35B2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610788   
Orphanet
DisGeNETSLC35B2
MedgenSLC35B2
Genetic Testing Registry SLC35B2
NextProtQ8TB61 [Medical]
TSGene347734
GENETestsSLC35B2
Target ValidationSLC35B2
Huge Navigator SLC35B2 [HugePedia]
snp3D : Map Gene to Disease347734
BioCentury BCIQSLC35B2
ClinGenSLC35B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347734
Chemical/Pharm GKB GenePA134927864
Clinical trialSLC35B2
Miscellaneous
canSAR (ICR)SLC35B2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35B2
EVEXSLC35B2
GoPubMedSLC35B2
iHOPSLC35B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:39:53 CET 2018

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