Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC35B3 (solute carrier family 35 member B3)

Identity

Alias_namesC6orf196
chromosome 6 open reading frame 196
solute carrier family 35, member B3
solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3
Alias_symbol (synonym)CGI-19
dJ453H5.1
PAPST2
Other alias
HGNC (Hugo) SLC35B3
LocusID (NCBI) 51000
Atlas_Id 52242
Location 6p24.3  [Link to chromosome band 6p24]
Location_base_pair Starts at 8413067 and ends at 8435567 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPX1 (3p21.31) / SLC35B3 (6p24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35B3   21601
Cards
Entrez_Gene (NCBI)SLC35B3  51000  solute carrier family 35 member B3
AliasesC6orf196; CGI-19; PAPST2
GeneCards (Weizmann)SLC35B3
Ensembl hg19 (Hinxton)ENSG00000124786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124786 [Gene_View]  ENSG00000124786 [Sequence]  chr6:8413067-8435567 [Contig_View]  SLC35B3 [Vega]
ICGC DataPortalENSG00000124786
TCGA cBioPortalSLC35B3
AceView (NCBI)SLC35B3
Genatlas (Paris)SLC35B3
WikiGenes51000
SOURCE (Princeton)SLC35B3
Genetics Home Reference (NIH)SLC35B3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35B3  -     chr6:8413067-8435567 -  6p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35B3  -     6p24.3   [Description]    (hg19-Feb_2009)
EnsemblSLC35B3 - 6p24.3 [CytoView hg19]  SLC35B3 - 6p24.3 [CytoView hg38]
Mapping of homologs : NCBISLC35B3 [Mapview hg19]  SLC35B3 [Mapview hg38]
OMIM610845   
Gene and transcription
Genbank (Entrez)AB231931 AF132953 AK303940 AK304250 AK309222
RefSeq transcript (Entrez)NM_001142540 NM_001142541 NM_015948
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35B3
Cluster EST : UnigeneHs.285847 [ NCBI ]
CGAP (NCI)Hs.285847
Alternative Splicing GalleryENSG00000124786
Gene ExpressionSLC35B3 [ NCBI-GEO ]   SLC35B3 [ EBI - ARRAY_EXPRESS ]   SLC35B3 [ SEEK ]   SLC35B3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35B3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51000
GTEX Portal (Tissue expression)SLC35B3
Human Protein AtlasENSG00000124786-SLC35B3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1N7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1N7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1N7
Splice isoforms : SwissVarQ9H1N7
PhosPhoSitePlusQ9H1N7
Domains : Interpro (EBI)UAA   
Domain families : Pfam (Sanger)UAA (PF08449)   
Domain families : Pfam (NCBI)pfam08449   
Conserved Domain (NCBI)SLC35B3
DMDM Disease mutations51000
Blocks (Seattle)SLC35B3
SuperfamilyQ9H1N7
Human Protein Atlas [tissue]ENSG00000124786-SLC35B3 [tissue]
Peptide AtlasQ9H1N7
HPRD11577
IPIIPI00152951   IPI00385333   IPI00425935   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1N7
IntAct (EBI)Q9H1N7
FunCoupENSG00000124786
BioGRIDSLC35B3
STRING (EMBL)SLC35B3
ZODIACSLC35B3
Ontologies - Pathways
QuickGOQ9H1N7
Ontology : AmiGOGolgi membrane  integral component of Golgi membrane  integral component of endoplasmic reticulum membrane  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  3'-phospho-5'-adenylyl sulfate transmembrane transport  
Ontology : EGO-EBIGolgi membrane  integral component of Golgi membrane  integral component of endoplasmic reticulum membrane  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  3'-phospho-5'-adenylyl sulfate transmembrane transport  
NDEx NetworkSLC35B3
Atlas of Cancer Signalling NetworkSLC35B3
Wikipedia pathwaysSLC35B3
Orthology - Evolution
OrthoDB51000
GeneTree (enSembl)ENSG00000124786
Phylogenetic Trees/Animal Genes : TreeFamSLC35B3
HOVERGENQ9H1N7
HOGENOMQ9H1N7
Homologs : HomoloGeneSLC35B3
Homology/Alignments : Family Browser (UCSC)SLC35B3
Gene fusions - Rearrangements
Fusion : QuiverSLC35B3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35B3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35B3
dbVarSLC35B3
ClinVarSLC35B3
1000_GenomesSLC35B3 
Exome Variant ServerSLC35B3
ExAC (Exome Aggregation Consortium)ENSG00000124786
GNOMAD BrowserENSG00000124786
Varsome BrowserSLC35B3
Genetic variants : HAPMAP51000
Genomic Variants (DGV)SLC35B3 [DGVbeta]
DECIPHERSLC35B3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35B3 
Mutations
ICGC Data PortalSLC35B3 
TCGA Data PortalSLC35B3 
Broad Tumor PortalSLC35B3
OASIS PortalSLC35B3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35B3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35B3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35B3
DgiDB (Drug Gene Interaction Database)SLC35B3
DoCM (Curated mutations)SLC35B3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35B3 (select a term)
intoGenSLC35B3
Cancer3DSLC35B3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610845   
Orphanet
DisGeNETSLC35B3
MedgenSLC35B3
Genetic Testing Registry SLC35B3
NextProtQ9H1N7 [Medical]
TSGene51000
GENETestsSLC35B3
Target ValidationSLC35B3
Huge Navigator SLC35B3 [HugePedia]
snp3D : Map Gene to Disease51000
BioCentury BCIQSLC35B3
ClinGenSLC35B3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51000
Chemical/Pharm GKB GenePA134889889
Clinical trialSLC35B3
Miscellaneous
canSAR (ICR)SLC35B3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35B3
EVEXSLC35B3
GoPubMedSLC35B3
iHOPSLC35B3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:39:53 CET 2018

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