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SLC35B4 (solute carrier family 35 member B4)

Identity

Alias_namessolute carrier family 35, member B4
solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4
Alias_symbol (synonym)FLJ14697
YEA4
Other aliasYEA
HGNC (Hugo) SLC35B4
LocusID (NCBI) 84912
Atlas_Id 73403
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 134289338 and ends at 134317075 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM204A (10q26.11) / SLC35B4 (7q33)NCOA2 (8q13.3) / SLC35B4 (7q33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35B4   20584
Cards
Entrez_Gene (NCBI)SLC35B4  84912  solute carrier family 35 member B4
AliasesYEA; YEA4
GeneCards (Weizmann)SLC35B4
Ensembl hg19 (Hinxton)ENSG00000205060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205060 [Gene_View]  chr7:134289338-134317075 [Contig_View]  SLC35B4 [Vega]
ICGC DataPortalENSG00000205060
TCGA cBioPortalSLC35B4
AceView (NCBI)SLC35B4
Genatlas (Paris)SLC35B4
WikiGenes84912
SOURCE (Princeton)SLC35B4
Genetics Home Reference (NIH)SLC35B4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35B4  -     chr7:134289338-134317075 -  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35B4  -     7q33   [Description]    (hg19-Feb_2009)
EnsemblSLC35B4 - 7q33 [CytoView hg19]  SLC35B4 - 7q33 [CytoView hg38]
Mapping of homologs : NCBISLC35B4 [Mapview hg19]  SLC35B4 [Mapview hg38]
OMIM610923   
Gene and transcription
Genbank (Entrez)AB052892 AI274082 AI695174 AI948585 AJ315497
RefSeq transcript (Entrez)NM_032826
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35B4
Cluster EST : UnigeneHs.490181 [ NCBI ]
CGAP (NCI)Hs.490181
Alternative Splicing GalleryENSG00000205060
Gene ExpressionSLC35B4 [ NCBI-GEO ]   SLC35B4 [ EBI - ARRAY_EXPRESS ]   SLC35B4 [ SEEK ]   SLC35B4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35B4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84912
GTEX Portal (Tissue expression)SLC35B4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969S0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969S0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969S0
Splice isoforms : SwissVarQ969S0
PhosPhoSitePlusQ969S0
Domains : Interpro (EBI)UAA   
Domain families : Pfam (Sanger)UAA (PF08449)   
Domain families : Pfam (NCBI)pfam08449   
Conserved Domain (NCBI)SLC35B4
DMDM Disease mutations84912
Blocks (Seattle)SLC35B4
SuperfamilyQ969S0
Human Protein AtlasENSG00000205060
Peptide AtlasQ969S0
HPRD11578
IPIIPI00299921   IPI00655802   IPI00655974   IPI00925959   
Protein Interaction databases
DIP (DOE-UCLA)Q969S0
IntAct (EBI)Q969S0
FunCoupENSG00000205060
BioGRIDSLC35B4
STRING (EMBL)SLC35B4
ZODIACSLC35B4
Ontologies - Pathways
QuickGOQ969S0
Ontology : AmiGOGolgi membrane  GDP-fucose transmembrane transporter activity  UDP-N-acetylglucosamine transmembrane transporter activity  UDP-N-acetylglucosamine transmembrane transporter activity  UDP-xylose transmembrane transporter activity  UDP-xylose transmembrane transporter activity  protein binding  endoplasmic reticulum  Golgi apparatus  regulation of gluconeogenesis  carbohydrate transport  GDP-fucose transport  UDP-N-acetylglucosamine transport  UDP-xylose transport  integral component of Golgi membrane  integral component of endoplasmic reticulum membrane  UDP-N-acetylglucosamine transmembrane transport  
Ontology : EGO-EBIGolgi membrane  GDP-fucose transmembrane transporter activity  UDP-N-acetylglucosamine transmembrane transporter activity  UDP-N-acetylglucosamine transmembrane transporter activity  UDP-xylose transmembrane transporter activity  UDP-xylose transmembrane transporter activity  protein binding  endoplasmic reticulum  Golgi apparatus  regulation of gluconeogenesis  carbohydrate transport  GDP-fucose transport  UDP-N-acetylglucosamine transport  UDP-xylose transport  integral component of Golgi membrane  integral component of endoplasmic reticulum membrane  UDP-N-acetylglucosamine transmembrane transport  
NDEx NetworkSLC35B4
Atlas of Cancer Signalling NetworkSLC35B4
Wikipedia pathwaysSLC35B4
Orthology - Evolution
OrthoDB84912
GeneTree (enSembl)ENSG00000205060
Phylogenetic Trees/Animal Genes : TreeFamSLC35B4
HOVERGENQ969S0
HOGENOMQ969S0
Homologs : HomoloGeneSLC35B4
Homology/Alignments : Family Browser (UCSC)SLC35B4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35B4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35B4
dbVarSLC35B4
ClinVarSLC35B4
1000_GenomesSLC35B4 
Exome Variant ServerSLC35B4
ExAC (Exome Aggregation Consortium)SLC35B4 (select the gene name)
Genetic variants : HAPMAP84912
Genomic Variants (DGV)SLC35B4 [DGVbeta]
DECIPHERSLC35B4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35B4 
Mutations
ICGC Data PortalSLC35B4 
TCGA Data PortalSLC35B4 
Broad Tumor PortalSLC35B4
OASIS PortalSLC35B4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35B4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35B4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35B4
DgiDB (Drug Gene Interaction Database)SLC35B4
DoCM (Curated mutations)SLC35B4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35B4 (select a term)
intoGenSLC35B4
Cancer3DSLC35B4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610923   
Orphanet
MedgenSLC35B4
Genetic Testing Registry SLC35B4
NextProtQ969S0 [Medical]
TSGene84912
GENETestsSLC35B4
Target ValidationSLC35B4
Huge Navigator SLC35B4 [HugePedia]
snp3D : Map Gene to Disease84912
BioCentury BCIQSLC35B4
ClinGenSLC35B4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84912
Chemical/Pharm GKB GenePA134922110
Clinical trialSLC35B4
Miscellaneous
canSAR (ICR)SLC35B4 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35B4
EVEXSLC35B4
GoPubMedSLC35B4
iHOPSLC35B4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:14 CEST 2017

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