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SLC35C1 (solute carrier family 35 (GDP-fucose transporter), member C1)

Identity

Other namesCDG2C
FUCT1
HGNC (Hugo) SLC35C1
LocusID (NCBI) 55343
Atlas_Id 50039
Location 11p11.2
Location_base_pair Starts at 45825623 and ends at 45834567 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC35C1   20197
Cards
Entrez_Gene (NCBI)SLC35C1  55343  solute carrier family 35 (GDP-fucose transporter), member C1
GeneCards (Weizmann)SLC35C1
Ensembl hg19 (Hinxton)ENSG00000181830 [Gene_View]  chr11:45825623-45834567 [Contig_View]  SLC35C1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181830 [Gene_View]  chr11:45825623-45834567 [Contig_View]  SLC35C1 [Vega]
ICGC DataPortalENSG00000181830
TCGA cBioPortalSLC35C1
AceView (NCBI)SLC35C1
Genatlas (Paris)SLC35C1
WikiGenes55343
SOURCE (Princeton)SLC35C1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC35C1  -     chr11:45825623-45834567 +  11p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC35C1  -     11p11.2   [Description]    (hg38-Dec_2013)
EnsemblSLC35C1 - 11p11.2 [CytoView hg19]  SLC35C1 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBISLC35C1 [Mapview hg19]  SLC35C1 [Mapview hg38]
OMIM266265   605881   
Gene and transcription
Genbank (Entrez)AF323970 AF326199 AK000527 AK002182 AK027394
RefSeq transcript (Entrez)NM_001145265 NM_001145266 NM_018389
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_009875 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)SLC35C1
Cluster EST : UnigeneHs.12211 [ NCBI ]
CGAP (NCI)Hs.12211
Alternative Splicing : Fast-db (Paris)GSHG0004786
Alternative Splicing GalleryENSG00000181830
Gene ExpressionSLC35C1 [ NCBI-GEO ]     SLC35C1 [ SEEK ]   SLC35C1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A29 (Uniprot)
NextProtQ96A29  [Medical]
With graphics : InterProQ96A29
Splice isoforms : SwissVarQ96A29 (Swissvar)
Domains : Interpro (EBI)EamA_dom    Tpt_PEP_trans_dom   
Related proteins : CluSTrQ96A29
Domain families : Pfam (Sanger)EamA (PF00892)    TPT (PF03151)   
Domain families : Pfam (NCBI)pfam00892    pfam03151   
DMDM Disease mutations55343
Blocks (Seattle)Q96A29
Human Protein AtlasENSG00000181830
Peptide AtlasQ96A29
HPRD09324
IPIIPI00020063   IPI00979330   IPI00922517   IPI00978656   IPI00978612   
Protein Interaction databases
DIP (DOE-UCLA)Q96A29
IntAct (EBI)Q96A29
FunCoupENSG00000181830
BioGRIDSLC35C1
IntegromeDBSLC35C1
STRING (EMBL)SLC35C1
Ontologies - Pathways
QuickGOQ96A29
Ontology : AmiGOGolgi membrane  Golgi apparatus  carbohydrate transport  integral component of membrane  lipid glycosylation  negative regulation of Notch signaling pathway  transmembrane transport  regulation of mitochondrion degradation  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  carbohydrate transport  integral component of membrane  lipid glycosylation  negative regulation of Notch signaling pathway  transmembrane transport  regulation of mitochondrion degradation  
Protein Interaction DatabaseSLC35C1
DoCM (Curated mutations)SLC35C1
Wikipedia pathwaysSLC35C1
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC35C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35C1
dbVarSLC35C1
ClinVarSLC35C1
1000_GenomesSLC35C1 
Exome Variant ServerSLC35C1
SNP (GeneSNP Utah)SLC35C1
SNP : HGBaseSLC35C1
Genetic variants : HAPMAPSLC35C1
Genomic Variants (DGV)SLC35C1 [DGVbeta]
Mutations
ICGC Data PortalSLC35C1 
TCGA Data PortalSLC35C1 
Tumor PortalSLC35C1
Somatic Mutations in Cancer : COSMICSLC35C1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:45825623-45834567
CONAN: Copy Number AnalysisSLC35C1 
Mutations and Diseases : HGMDSLC35C1
OMIM266265    605881   
MedgenSLC35C1
NextProtQ96A29 [Medical]
GENETestsSLC35C1
Disease Genetic AssociationSLC35C1
Huge Navigator SLC35C1 [HugePedia]  SLC35C1 [HugeCancerGEM]
snp3D : Map Gene to Disease55343
DGIdb (Drug Gene Interaction db)SLC35C1
General knowledge
Homologs : HomoloGeneSLC35C1
Homology/Alignments : Family Browser (UCSC)SLC35C1
Phylogenetic Trees/Animal Genes : TreeFamSLC35C1
Chemical/Protein Interactions : CTD55343
Chemical/Pharm GKB GenePA134930330
Clinical trialSLC35C1
Cancer Resource (Charite)ENSG00000181830
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
CoreMineSLC35C1
GoPubMedSLC35C1
iHOPSLC35C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 20 20:05:38 CEST 2015

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