Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

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SLC35C1 (solute carrier family 35 (GDP-fucose transporter), member C1)


Other namesCDG2C
HGNC (Hugo) SLC35C1
LocusID (NCBI) 55343
Location 11p11.2
Location_base_pair Starts at 45825623 and ends at 45834567 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)SLC35C1   20197
Entrez_Gene (NCBI)SLC35C1  55343  solute carrier family 35 (GDP-fucose transporter), member C1
GeneCards (Weizmann)SLC35C1
Ensembl hg19 (Hinxton)ENSG00000181830 [Gene_View]  chr11:45825623-45834567 [Contig_View]  SLC35C1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181830 [Gene_View]  chr11:45825623-45834567 [Contig_View]  SLC35C1 [Vega]
ICGC DataPortalENSG00000181830
AceView (NCBI)SLC35C1
Genatlas (Paris)SLC35C1
SOURCE (Princeton)SLC35C1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC35C1  -     chr11:45825623-45834567 +  11p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC35C1  -     11p11.2   [Description]    (hg38-Dec_2013)
EnsemblSLC35C1 - 11p11.2 [CytoView hg19]  SLC35C1 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBISLC35C1 [Mapview hg19]  SLC35C1 [Mapview hg38]
OMIM266265   605881   
Gene and transcription
Genbank (Entrez)AF323970 AF326199 AK000527 AK002182 AK027394
RefSeq transcript (Entrez)NM_001145265 NM_001145266 NM_018389
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_009875 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)SLC35C1
Cluster EST : UnigeneHs.12211 [ NCBI ]
CGAP (NCI)Hs.12211
Alternative Splicing : Fast-db (Paris)GSHG0004786
Alternative Splicing GalleryENSG00000181830
Gene ExpressionSLC35C1 [ NCBI-GEO ]     SLC35C1 [ SEEK ]   SLC35C1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A29 (Uniprot)
NextProtQ96A29  [Medical]
With graphics : InterProQ96A29
Splice isoforms : SwissVarQ96A29 (Swissvar)
Domains : Interpro (EBI)EamA_dom    Tpt_PEP_trans_dom   
Related proteins : CluSTrQ96A29
Domain families : Pfam (Sanger)EamA (PF00892)    TPT (PF03151)   
Domain families : Pfam (NCBI)pfam00892    pfam03151   
DMDM Disease mutations55343
Blocks (Seattle)Q96A29
Human Protein AtlasENSG00000181830
Peptide AtlasQ96A29
IPIIPI00020063   IPI00979330   IPI00922517   IPI00978656   IPI00978612   
Protein Interaction databases
IntAct (EBI)Q96A29
Ontologies - Pathways
Ontology : AmiGOGolgi membrane  Golgi apparatus  carbohydrate transport  integral component of membrane  lipid glycosylation  negative regulation of Notch signaling pathway  transmembrane transport  regulation of mitochondrion degradation  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  carbohydrate transport  integral component of membrane  lipid glycosylation  negative regulation of Notch signaling pathway  transmembrane transport  regulation of mitochondrion degradation  
Protein Interaction DatabaseSLC35C1
DoCM (Curated mutations)SLC35C1
Wikipedia pathwaysSLC35C1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC35C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35C1
Exome Variant ServerSLC35C1
SNP (GeneSNP Utah)SLC35C1
Genetic variants : HAPMAPSLC35C1
Genomic Variants (DGV)SLC35C1 [DGVbeta]
ICGC Data PortalENSG00000181830 
Somatic Mutations in Cancer : COSMICSLC35C1 
CONAN: Copy Number AnalysisSLC35C1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)11:45825623-45834567
Mutations and Diseases : HGMDSLC35C1
OMIM266265    605881   
NextProtQ96A29 [Medical]
Disease Genetic AssociationSLC35C1
Huge Navigator SLC35C1 [HugePedia]  SLC35C1 [HugeCancerGEM]
snp3D : Map Gene to Disease55343
DGIdb (Drug Gene Interaction db)SLC35C1
General knowledge
Homologs : HomoloGeneSLC35C1
Homology/Alignments : Family Browser (UCSC)SLC35C1
Phylogenetic Trees/Animal Genes : TreeFamSLC35C1
Chemical/Protein Interactions : CTD55343
Chemical/Pharm GKB GenePA134930330
Clinical trialSLC35C1
Cancer Resource (Charite)ENSG00000181830
Other databases
PubMed18 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:20:21 CET 2015

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