Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC35C2 (solute carrier family 35 member C2)

Identity

Alias_namesC20orf5
OVCOV1
ovarian cancer overexpressed 1
solute carrier family 35, member C2
solute carrier family 35 (GDP-fucose transporter), member C2
Alias_symbol (synonym)CGI-15
bA394O2.1
Other aliasBA394O2.1
HGNC (Hugo) SLC35C2
LocusID (NCBI) 51006
Atlas_Id 42321
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 46349528 and ends at 46364458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC35C2 (20q13.12) / DSN1 (20q11.23)SNX5 (20p11.23) / SLC35C2 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35C2   17117
Cards
Entrez_Gene (NCBI)SLC35C2  51006  solute carrier family 35 member C2
AliasesBA394O2.1; C20orf5; CGI-15; OVCOV1
GeneCards (Weizmann)SLC35C2
Ensembl hg19 (Hinxton)ENSG00000080189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000080189 [Gene_View]  chr20:46349528-46364458 [Contig_View]  SLC35C2 [Vega]
ICGC DataPortalENSG00000080189
TCGA cBioPortalSLC35C2
AceView (NCBI)SLC35C2
Genatlas (Paris)SLC35C2
WikiGenes51006
SOURCE (Princeton)SLC35C2
Genetics Home Reference (NIH)SLC35C2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35C2  -     chr20:46349528-46364458 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35C2  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblSLC35C2 - 20q13.12 [CytoView hg19]  SLC35C2 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISLC35C2 [Mapview hg19]  SLC35C2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF132949 AF455052 AK094358 AK128842 AK222928
RefSeq transcript (Entrez)NM_001281457 NM_001281458 NM_001281459 NM_001281460 NM_015945 NM_173073 NM_173179
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35C2
Cluster EST : UnigeneHs.723629 [ NCBI ]
CGAP (NCI)Hs.723629
Alternative Splicing GalleryENSG00000080189
Gene ExpressionSLC35C2 [ NCBI-GEO ]   SLC35C2 [ EBI - ARRAY_EXPRESS ]   SLC35C2 [ SEEK ]   SLC35C2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35C2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51006
GTEX Portal (Tissue expression)SLC35C2
Human Protein AtlasENSG00000080189-SLC35C2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQQ7
Splice isoforms : SwissVarQ9NQQ7
PhosPhoSitePlusQ9NQQ7
Domains : Interpro (EBI)Sugar_P_trans_dom   
Domain families : Pfam (Sanger)TPT (PF03151)   
Domain families : Pfam (NCBI)pfam03151   
Conserved Domain (NCBI)SLC35C2
DMDM Disease mutations51006
Blocks (Seattle)SLC35C2
SuperfamilyQ9NQQ7
Human Protein Atlas [tissue]ENSG00000080189-SLC35C2 [tissue]
Peptide AtlasQ9NQQ7
HPRD15371
IPIIPI01012447   IPI00010838   IPI00099939   IPI00873765   IPI00982746   IPI00646542   IPI00553077   IPI00552915   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQQ7
IntAct (EBI)Q9NQQ7
FunCoupENSG00000080189
BioGRIDSLC35C2
STRING (EMBL)SLC35C2
ZODIACSLC35C2
Ontologies - Pathways
QuickGOQ9NQQ7
Ontology : AmiGOnucleoplasm  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  cis-Golgi network  transport  negative regulation of gene expression  integral component of membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  protein O-linked fucosylation  positive regulation of Notch signaling pathway  
Ontology : EGO-EBInucleoplasm  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  cis-Golgi network  transport  negative regulation of gene expression  integral component of membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  protein O-linked fucosylation  positive regulation of Notch signaling pathway  
NDEx NetworkSLC35C2
Atlas of Cancer Signalling NetworkSLC35C2
Wikipedia pathwaysSLC35C2
Orthology - Evolution
OrthoDB51006
GeneTree (enSembl)ENSG00000080189
Phylogenetic Trees/Animal Genes : TreeFamSLC35C2
HOVERGENQ9NQQ7
HOGENOMQ9NQQ7
Homologs : HomoloGeneSLC35C2
Homology/Alignments : Family Browser (UCSC)SLC35C2
Gene fusions - Rearrangements
Tumor Fusion PortalSLC35C2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35C2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35C2
dbVarSLC35C2
ClinVarSLC35C2
1000_GenomesSLC35C2 
Exome Variant ServerSLC35C2
ExAC (Exome Aggregation Consortium)ENSG00000080189
GNOMAD BrowserENSG00000080189
Genetic variants : HAPMAP51006
Genomic Variants (DGV)SLC35C2 [DGVbeta]
DECIPHERSLC35C2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35C2 
Mutations
ICGC Data PortalSLC35C2 
TCGA Data PortalSLC35C2 
Broad Tumor PortalSLC35C2
OASIS PortalSLC35C2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35C2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35C2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35C2
DgiDB (Drug Gene Interaction Database)SLC35C2
DoCM (Curated mutations)SLC35C2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35C2 (select a term)
intoGenSLC35C2
Cancer3DSLC35C2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC35C2
MedgenSLC35C2
Genetic Testing Registry SLC35C2
NextProtQ9NQQ7 [Medical]
TSGene51006
GENETestsSLC35C2
Target ValidationSLC35C2
Huge Navigator SLC35C2 [HugePedia]
snp3D : Map Gene to Disease51006
BioCentury BCIQSLC35C2
ClinGenSLC35C2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51006
Chemical/Pharm GKB GenePA32850
Clinical trialSLC35C2
Miscellaneous
canSAR (ICR)SLC35C2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35C2
EVEXSLC35C2
GoPubMedSLC35C2
iHOPSLC35C2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:35:10 CET 2017

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