Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC35D1 (solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1)

Identity

Alias_namessolute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1
Alias_symbol (synonym)UGTREL7
KIAA0260
Other alias
HGNC (Hugo) SLC35D1
LocusID (NCBI) 23169
Atlas_Id 73404
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 67465015 and ends at 67520080 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAB1A (2p14) / SLC35D1 (1p31.3)SLC35D1 (1p31.3) / PRKAR2B (7q22.3)TOB2 (22q13.2) / SLC35D1 (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35D1   20800
Cards
Entrez_Gene (NCBI)SLC35D1  23169  solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1
AliasesUGTREL7
GeneCards (Weizmann)SLC35D1
Ensembl hg19 (Hinxton)ENSG00000116704 [Gene_View]  chr1:67465015-67520080 [Contig_View]  SLC35D1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116704 [Gene_View]  chr1:67465015-67520080 [Contig_View]  SLC35D1 [Vega]
ICGC DataPortalENSG00000116704
TCGA cBioPortalSLC35D1
AceView (NCBI)SLC35D1
Genatlas (Paris)SLC35D1
WikiGenes23169
SOURCE (Princeton)SLC35D1
Genetics Home Reference (NIH)SLC35D1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC35D1  -     chr1:67465015-67520080 -  1p31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC35D1  -     1p31.3   [Description]    (hg38-Dec_2013)
EnsemblSLC35D1 - 1p31.3 [CytoView hg19]  SLC35D1 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBISLC35D1 [Mapview hg19]  SLC35D1 [Mapview hg38]
OMIM269250   610804   
Gene and transcription
Genbank (Entrez)AB044343 AK289800 AK296449 AK316023 BC093786
RefSeq transcript (Entrez)NM_015139
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_012933 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)SLC35D1
Cluster EST : UnigeneHs.213642 [ NCBI ]
CGAP (NCI)Hs.213642
Alternative Splicing GalleryENSG00000116704
Gene ExpressionSLC35D1 [ NCBI-GEO ]   SLC35D1 [ EBI - ARRAY_EXPRESS ]   SLC35D1 [ SEEK ]   SLC35D1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23169
GTEX Portal (Tissue expression)SLC35D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTN3
Splice isoforms : SwissVarQ9NTN3
PhosPhoSitePlusQ9NTN3
Domains : Interpro (EBI)Tpt_PEP_trans_dom   
Domain families : Pfam (Sanger)TPT (PF03151)   
Domain families : Pfam (NCBI)pfam03151   
Conserved Domain (NCBI)SLC35D1
DMDM Disease mutations23169
Blocks (Seattle)SLC35D1
SuperfamilyQ9NTN3
Human Protein AtlasENSG00000116704
Peptide AtlasQ9NTN3
HPRD15372
IPIIPI00027554   IPI00922034   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTN3
IntAct (EBI)Q9NTN3
FunCoupENSG00000116704
BioGRIDSLC35D1
STRING (EMBL)SLC35D1
ZODIACSLC35D1
Ontologies - Pathways
QuickGOQ9NTN3
Ontology : AmiGOUDP-glucuronic acid transmembrane transporter activity  endoplasmic reticulum membrane  UDP-glucuronate biosynthetic process  xenobiotic metabolic process  carbohydrate transport  pyrimidine nucleotide-sugar transmembrane transporter activity  antiporter activity  UDP-glucuronic acid transport  integral component of membrane  chondroitin sulfate biosynthetic process  small molecule metabolic process  embryonic skeletal system development  cellular glucuronidation  transmembrane transport  pyrimidine nucleotide-sugar transmembrane transport  anion transmembrane transport  
Ontology : EGO-EBIUDP-glucuronic acid transmembrane transporter activity  endoplasmic reticulum membrane  UDP-glucuronate biosynthetic process  xenobiotic metabolic process  carbohydrate transport  pyrimidine nucleotide-sugar transmembrane transporter activity  antiporter activity  UDP-glucuronic acid transport  integral component of membrane  chondroitin sulfate biosynthetic process  small molecule metabolic process  embryonic skeletal system development  cellular glucuronidation  transmembrane transport  pyrimidine nucleotide-sugar transmembrane transport  anion transmembrane transport  
NDEx NetworkSLC35D1
Atlas of Cancer Signalling NetworkSLC35D1
Wikipedia pathwaysSLC35D1
Orthology - Evolution
OrthoDB23169
GeneTree (enSembl)ENSG00000116704
Phylogenetic Trees/Animal Genes : TreeFamSLC35D1
HOVERGENQ9NTN3
HOGENOMQ9NTN3
Homologs : HomoloGeneSLC35D1
Homology/Alignments : Family Browser (UCSC)SLC35D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35D1
dbVarSLC35D1
ClinVarSLC35D1
1000_GenomesSLC35D1 
Exome Variant ServerSLC35D1
ExAC (Exome Aggregation Consortium)SLC35D1 (select the gene name)
Genetic variants : HAPMAP23169
Genomic Variants (DGV)SLC35D1 [DGVbeta]
DECIPHER (Syndromes)1:67465015-67520080  ENSG00000116704
CONAN: Copy Number AnalysisSLC35D1 
Mutations
ICGC Data PortalSLC35D1 
TCGA Data PortalSLC35D1 
Broad Tumor PortalSLC35D1
OASIS PortalSLC35D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35D1
DgiDB (Drug Gene Interaction Database)SLC35D1
DoCM (Curated mutations)SLC35D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35D1 (select a term)
intoGenSLC35D1
Cancer3DSLC35D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM269250    610804   
Orphanet2813   
MedgenSLC35D1
Genetic Testing Registry SLC35D1
NextProtQ9NTN3 [Medical]
TSGene23169
GENETestsSLC35D1
Huge Navigator SLC35D1 [HugePedia]
snp3D : Map Gene to Disease23169
BioCentury BCIQSLC35D1
ClinGenSLC35D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23169
Chemical/Pharm GKB GenePA134978757
Clinical trialSLC35D1
Miscellaneous
canSAR (ICR)SLC35D1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35D1
EVEXSLC35D1
GoPubMedSLC35D1
iHOPSLC35D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:41 CET 2017

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