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SLC35D2 (solute carrier family 35 member D2)

Identity

Alias_namessolute carrier family 35, member D2
solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2
Alias_symbol (synonym)UGTrel8
SQV7L
Other aliasHFRC1
hfrc
HGNC (Hugo) SLC35D2
LocusID (NCBI) 11046
Atlas_Id 43015
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 99082988 and ends at 99145992 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC69 (5q33.1) / SLC35D2 (9q22.32)YME1L1 (10p12.1) / SLC35D2 (9q22.32)YME1L1 10p12.1 / SLC35D2 9q22.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35D2   20799
Cards
Entrez_Gene (NCBI)SLC35D2  11046  solute carrier family 35 member D2
AliasesHFRC1; SQV7L; UGTrel8; hfrc
GeneCards (Weizmann)SLC35D2
Ensembl hg19 (Hinxton)ENSG00000130958 [Gene_View]  chr9:99082988-99145992 [Contig_View]  SLC35D2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130958 [Gene_View]  chr9:99082988-99145992 [Contig_View]  SLC35D2 [Vega]
ICGC DataPortalENSG00000130958
TCGA cBioPortalSLC35D2
AceView (NCBI)SLC35D2
Genatlas (Paris)SLC35D2
WikiGenes11046
SOURCE (Princeton)SLC35D2
Genetics Home Reference (NIH)SLC35D2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC35D2  -     chr9:99082988-99145992 -  9q22.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC35D2  -     9q22.32   [Description]    (hg38-Dec_2013)
EnsemblSLC35D2 - 9q22.32 [CytoView hg19]  SLC35D2 - 9q22.32 [CytoView hg38]
Mapping of homologs : NCBISLC35D2 [Mapview hg19]  SLC35D2 [Mapview hg38]
OMIM609182   
Gene and transcription
Genbank (Entrez)AB106537 AB122077 AJ005866 AK024841 AK307890
RefSeq transcript (Entrez)NM_001286990 NM_007001
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SLC35D2
Cluster EST : UnigeneHs.731624 [ NCBI ]
CGAP (NCI)Hs.731624
Alternative Splicing GalleryENSG00000130958
Gene ExpressionSLC35D2 [ NCBI-GEO ]   SLC35D2 [ EBI - ARRAY_EXPRESS ]   SLC35D2 [ SEEK ]   SLC35D2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11046
GTEX Portal (Tissue expression)SLC35D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ76EJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ76EJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ76EJ3
Splice isoforms : SwissVarQ76EJ3
PhosPhoSitePlusQ76EJ3
Domains : Interpro (EBI)Sugar_P_trans_dom   
Domain families : Pfam (Sanger)TPT (PF03151)   
Domain families : Pfam (NCBI)pfam03151   
Conserved Domain (NCBI)SLC35D2
DMDM Disease mutations11046
Blocks (Seattle)SLC35D2
SuperfamilyQ76EJ3
Human Protein AtlasENSG00000130958
Peptide AtlasQ76EJ3
HPRD16456
IPIIPI00400818   IPI00644710   
Protein Interaction databases
DIP (DOE-UCLA)Q76EJ3
IntAct (EBI)Q76EJ3
FunCoupENSG00000130958
BioGRIDSLC35D2
STRING (EMBL)SLC35D2
ZODIACSLC35D2
Ontologies - Pathways
QuickGOQ76EJ3
Ontology : AmiGOGolgi membrane  nucleotide-sugar transmembrane transporter activity  nucleotide-sugar transmembrane transporter activity  cellular_component  glycosaminoglycan biosynthetic process  biological_process  carbohydrate transport  pyrimidine nucleotide-sugar transmembrane transporter activity  integral component of membrane  keratan sulfate biosynthetic process  pyrimidine nucleotide-sugar transmembrane transport  carbohydrate derivative transport  carbohydrate derivative transport  nucleotide transmembrane transport  nucleotide transmembrane transport  
Ontology : EGO-EBIGolgi membrane  nucleotide-sugar transmembrane transporter activity  nucleotide-sugar transmembrane transporter activity  cellular_component  glycosaminoglycan biosynthetic process  biological_process  carbohydrate transport  pyrimidine nucleotide-sugar transmembrane transporter activity  integral component of membrane  keratan sulfate biosynthetic process  pyrimidine nucleotide-sugar transmembrane transport  carbohydrate derivative transport  carbohydrate derivative transport  nucleotide transmembrane transport  nucleotide transmembrane transport  
NDEx NetworkSLC35D2
Atlas of Cancer Signalling NetworkSLC35D2
Wikipedia pathwaysSLC35D2
Orthology - Evolution
OrthoDB11046
GeneTree (enSembl)ENSG00000130958
Phylogenetic Trees/Animal Genes : TreeFamSLC35D2
HOVERGENQ76EJ3
HOGENOMQ76EJ3
Homologs : HomoloGeneSLC35D2
Homology/Alignments : Family Browser (UCSC)SLC35D2
Gene fusions - Rearrangements
Fusion : MitelmanYME1L1/SLC35D2 [10p12.1/9q22.32]  [t(9;10)(q22;p12)]  
Fusion: TCGAYME1L1 10p12.1 SLC35D2 9q22.32 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35D2
dbVarSLC35D2
ClinVarSLC35D2
1000_GenomesSLC35D2 
Exome Variant ServerSLC35D2
ExAC (Exome Aggregation Consortium)SLC35D2 (select the gene name)
Genetic variants : HAPMAP11046
Genomic Variants (DGV)SLC35D2 [DGVbeta]
DECIPHER (Syndromes)9:99082988-99145992  ENSG00000130958
CONAN: Copy Number AnalysisSLC35D2 
Mutations
ICGC Data PortalSLC35D2 
TCGA Data PortalSLC35D2 
Broad Tumor PortalSLC35D2
OASIS PortalSLC35D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35D2
DgiDB (Drug Gene Interaction Database)SLC35D2
DoCM (Curated mutations)SLC35D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35D2 (select a term)
intoGenSLC35D2
Cancer3DSLC35D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609182   
Orphanet
MedgenSLC35D2
Genetic Testing Registry SLC35D2
NextProtQ76EJ3 [Medical]
TSGene11046
GENETestsSLC35D2
Huge Navigator SLC35D2 [HugePedia]
snp3D : Map Gene to Disease11046
BioCentury BCIQSLC35D2
ClinGenSLC35D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11046
Chemical/Pharm GKB GenePA134909604
Clinical trialSLC35D2
Miscellaneous
canSAR (ICR)SLC35D2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35D2
EVEXSLC35D2
GoPubMedSLC35D2
iHOPSLC35D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:45 CEST 2017

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