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SLC35D3 (solute carrier family 35 member D3)

Identity

Alias_namesFRCL1
solute carrier family 35, member D3
Other alias
HGNC (Hugo) SLC35D3
LocusID (NCBI) 340146
Atlas_Id 73405
Location 6q23.3  [Link to chromosome band 6q23]
Location_base_pair Starts at 136922241 and ends at 136925660 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC35D3   15621
Cards
Entrez_Gene (NCBI)SLC35D3  340146  solute carrier family 35 member D3
AliasesFRCL1
GeneCards (Weizmann)SLC35D3
Ensembl hg19 (Hinxton)ENSG00000182747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182747 [Gene_View]  ENSG00000182747 [Sequence]  chr6:136922241-136925660 [Contig_View]  SLC35D3 [Vega]
ICGC DataPortalENSG00000182747
TCGA cBioPortalSLC35D3
AceView (NCBI)SLC35D3
Genatlas (Paris)SLC35D3
WikiGenes340146
SOURCE (Princeton)SLC35D3
Genetics Home Reference (NIH)SLC35D3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC35D3  -     chr6:136922241-136925660 +  6q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC35D3  -     6q23.3   [Description]    (hg19-Feb_2009)
EnsemblSLC35D3 - 6q23.3 [CytoView hg19]  SLC35D3 - 6q23.3 [CytoView hg38]
Mapping of homologs : NCBISLC35D3 [Mapview hg19]  SLC35D3 [Mapview hg38]
OMIM612519   
Gene and transcription
Genbank (Entrez)AK295424 AK316095 BC067217 BC087842 BE669463
RefSeq transcript (Entrez)NM_001008783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC35D3
Cluster EST : UnigeneHs.369703 [ NCBI ]
CGAP (NCI)Hs.369703
Alternative Splicing GalleryENSG00000182747
Gene ExpressionSLC35D3 [ NCBI-GEO ]   SLC35D3 [ EBI - ARRAY_EXPRESS ]   SLC35D3 [ SEEK ]   SLC35D3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC35D3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340146
GTEX Portal (Tissue expression)SLC35D3
Human Protein AtlasENSG00000182747-SLC35D3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5M8T2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5M8T2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5M8T2
Splice isoforms : SwissVarQ5M8T2
PhosPhoSitePlusQ5M8T2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC35D3
DMDM Disease mutations340146
Blocks (Seattle)SLC35D3
SuperfamilyQ5M8T2
Human Protein Atlas [tissue]ENSG00000182747-SLC35D3 [tissue]
Peptide AtlasQ5M8T2
HPRD18059
IPIIPI00247490   
Protein Interaction databases
DIP (DOE-UCLA)Q5M8T2
IntAct (EBI)Q5M8T2
FunCoupENSG00000182747
BioGRIDSLC35D3
STRING (EMBL)SLC35D3
ZODIACSLC35D3
Ontologies - Pathways
QuickGOQ5M8T2
Ontology : AmiGOearly endosome  endoplasmic reticulum  carbohydrate transport  integral component of membrane  positive regulation of protein exit from endoplasmic reticulum  energy homeostasis  
Ontology : EGO-EBIearly endosome  endoplasmic reticulum  carbohydrate transport  integral component of membrane  positive regulation of protein exit from endoplasmic reticulum  energy homeostasis  
NDEx NetworkSLC35D3
Atlas of Cancer Signalling NetworkSLC35D3
Wikipedia pathwaysSLC35D3
Orthology - Evolution
OrthoDB340146
GeneTree (enSembl)ENSG00000182747
Phylogenetic Trees/Animal Genes : TreeFamSLC35D3
HOVERGENQ5M8T2
HOGENOMQ5M8T2
Homologs : HomoloGeneSLC35D3
Homology/Alignments : Family Browser (UCSC)SLC35D3
Gene fusions - Rearrangements
Fusion : QuiverSLC35D3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC35D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC35D3
dbVarSLC35D3
ClinVarSLC35D3
1000_GenomesSLC35D3 
Exome Variant ServerSLC35D3
ExAC (Exome Aggregation Consortium)ENSG00000182747
GNOMAD BrowserENSG00000182747
Varsome BrowserSLC35D3
Genetic variants : HAPMAP340146
Genomic Variants (DGV)SLC35D3 [DGVbeta]
DECIPHERSLC35D3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC35D3 
Mutations
ICGC Data PortalSLC35D3 
TCGA Data PortalSLC35D3 
Broad Tumor PortalSLC35D3
OASIS PortalSLC35D3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC35D3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC35D3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC35D3
DgiDB (Drug Gene Interaction Database)SLC35D3
DoCM (Curated mutations)SLC35D3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC35D3 (select a term)
intoGenSLC35D3
Cancer3DSLC35D3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612519   
Orphanet
DisGeNETSLC35D3
MedgenSLC35D3
Genetic Testing Registry SLC35D3
NextProtQ5M8T2 [Medical]
TSGene340146
GENETestsSLC35D3
Target ValidationSLC35D3
Huge Navigator SLC35D3 [HugePedia]
snp3D : Map Gene to Disease340146
BioCentury BCIQSLC35D3
ClinGenSLC35D3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340146
Chemical/Pharm GKB GenePA134876893
Clinical trialSLC35D3
Miscellaneous
canSAR (ICR)SLC35D3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC35D3
EVEXSLC35D3
GoPubMedSLC35D3
iHOPSLC35D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:29:27 CEST 2018

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